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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.159239 (51 seq.)
>C171103267
CP020046
Betaproteobacteria
Thiomonas intermedia ATCC 15466 [CP020046]
575880
575803
-
Arg
ACG
-
¡û
>W131169100
AREM01000002
Betaproteobacteria
Oligella ureolytica DSM 18253 [AREM]
92013
92090
+
Arg
ACG
[ENA]
¡û
>W131169118
AREM01000017
Betaproteobacteria
Oligella ureolytica DSM 18253 [AREM]
53423
53500
+
Arg
ACG
[ENA]
¡û
>WENV181231337
OFEK01020634
[OFEK] activated sludge metagenome; Anaerobic digester
275
352
+
Arg
ACG
[ENA]
¢þ
>W141194179
AYSV01000029
Betaproteobacteria
Pelistega indica HM-7 [AYSV]
1904
1981
+
Arg
ACG
[ENA]
¡û
>W141194180
AYSV01000029
Betaproteobacteria
Pelistega indica HM-7 [AYSV]
2018
2095
+
Arg
ACG
[ENA]
¡û
>W141200406
AYXT01000014
Betaproteobacteria
Advenella kashmirensis W13003 [AYXT]
246847
246924
+
Arg
ACG
[ENA]
¡û
>WENV183710667
PDWI01051240
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
1341
1264
-
Arg
ACG
[ENA]
¢þ
>WENV183710668
PDWI01051240
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
1223
1146
-
Arg
ACG
[ENA]
¢þ
>WENV170684110
LFRM01020247
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
2938
2861
-
Arg
ACG
[ENA]
¢þ
>WENV170686039
LFRM01123205
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
1683
1760
+
Arg
ACG
[ENA]
¢þ
>WENV170686040
LFRM01123205
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
1775
1852
+
Arg
ACG
[ENA]
¢þ
>WENV170686143
LFRM01129040
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
1839
1762
-
Arg
ACG
[ENA]
¢þ
>WENV170717799
LSQX01050003
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
32834
32757
-
Arg
ACG
[ENA]
¢þ
>WENV170717800
LSQX01050003
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
32739
32662
-
Arg
ACG
[ENA]
¢þ
>WENV170718459
LSQX01076671
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
29348
29425
+
Arg
ACG
[ENA]
¢þ
>WENV170721570
LSQX01195375
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
5039
5116
+
Arg
ACG
[ENA]
¢þ
>WENV170722180
LSQX01219880
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
13499
13576
+
Arg
ACG
[ENA]
¢þ
>WENV170724908
LSQX01323214
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
8151
8228
+
Arg
ACG
[ENA]
¢þ
>WENV170724949
LSQX01324600
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
27039
27116
+
Arg
ACG
[ENA]
¢þ
>WENV170726859
LSQX01396425
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
29448
29525
+
Arg
ACG
[ENA]
¢þ
>C181049103
CP021060
Betaproteobacteria
Taylorella equigenitalis 92-0972 [CP021060]
619915
619838
-
Arg
ACG
-
¡û
>C181049968
CP021199
Betaproteobacteria
Taylorella equigenitalis 89-0490 [CP021199]
605509
605432
-
Arg
ACG
-
¡û
>C181050005
CP021200
Betaproteobacteria
Taylorella equigenitalis 79-1587 [CP021200]
636919
636842
-
Arg
ACG
-
¡û
>C181050042
CP021201
Betaproteobacteria
Taylorella equigenitalis 09-0932 [CP021201]
604851
604774
-
Arg
ACG
-
¡û
>C181050124
CP021246
Betaproteobacteria
Taylorella equigenitalis 98-0554 [CP021246]
613745
613668
-
Arg
ACG
-
¡û
>C181120998
CP025628
Betaproteobacteria
Candidatus Kinetoplastibacterium sorsogonicusi MF-08 [CP025628]
171738
171815
+
Arg
ACG
-
¡û
>C191208091
LR134346
Betaproteobacteria
Taylorella equigenitalis ATCC 35865 NCTC11184 [LR134346]
606582
606505
-
Arg
ACG
-
¡û
>W141560349
JHXN01000001
Betaproteobacteria
Taylorella asinigenitalis ATCC 700933 [JHXN]
310778
310855
+
Arg
ACG
[ENA]
¡û
>W141562674
JHZJ01000004
Betaproteobacteria
Brackiella oedipodis DSM 13743 [JHZJ]
204634
204557
-
Arg
ACG
[ENA]
¡û
>W1910225816
FMSW01000011
Betaproteobacteria
Pelistega sp. MC2 [FMSW]
500119
500042
-
Arg
ACG
[ENA]
¡û
>W1910225817
FMSW01000011
Betaproteobacteria
Pelistega sp. MC2 [FMSW]
500005
499928
-
Arg
ACG
[ENA]
¡û
>W1910891688
NEXS01000009
Betaproteobacteria
Advenella sp. S44 [NEXS]
229287
229364
+
Arg
ACG
[ENA]
¡û
>W1810701973
QMFX01000003
Betaproteobacteria
Taylorella equigenitalis 210217RC10635 [QMFX]
212127
212050
-
Arg
ACG
[ENA]
¡û
>C151004946
CP003915
Betaproteobacteria
Advenella mimigardefordensis DPN7 [CP003915]
1474261
1474184
-
Arg
ACG
[Ensembl]
¡û
>W1510741300
CYHF01000012
Betaproteobacteria
Thiomonas bhubaneswarensis DSM 18181 [CYHF]
25613
25536
-
Arg
ACG
[ENA]
¡û
>W1511350716
JRMO01000013
Betaproteobacteria
Taylorella equigenitalis MCE529 [JRMO]
213328
213251
-
Arg
ACG
[ENA]
¡û
>C11122623
CP002456
Betaproteobacteria
Taylorella equigenitalis MCE9 [CP002456]
1256995
1256918
-
Arg
ACG
[Ensembl]
¡û
>W11171195
AFQG01000011
Betaproteobacteria
Advenella kashmirensis WT001 [AFQG]
33700
33623
-
Arg
ACG
[ENA]
¡û
>C121004867
CP003059
Betaproteobacteria
Taylorella asinigenitalis MCE3 [CP003059]
648936
648859
-
Arg
ACG
[Ensembl]
¡û
>C121009954
CP003264
Betaproteobacteria
Taylorella equigenitalis ATCC 35865 [CP003264]
636911
636834
-
Arg
ACG
[Ensembl]
¡û
>C121014502
CP003555
Betaproteobacteria
Advenella kashmirensis WT001 [CP003555]
2897075
2897152
+
Arg
ACG
[Ensembl]
¡û
>C131005628
CP003733
Betaproteobacteria
Candidatus Kinetoplastibacterium blastocrithidii [ex Strigomonas [CP003733]
356568
356645
+
Arg
ACG
[Ensembl]
¡û
>C131007191
CP003803
Betaproteobacteria
Candidatus Kinetoplastibacterium desouzaii TCC079E [CP003803]
187617
187694
+
Arg
ACG
[Ensembl]
¡û
>C131007232
CP003804
Betaproteobacteria
Candidatus Kinetoplastibacterium crithidii TCC036E [CP003804]
186358
186435
+
Arg
ACG
[Ensembl]
¡û
>C131007359
CP003807
Betaproteobacteria
Candidatus Kinetoplastibacterium blastocrithidii TCC012E [CP003807]
185645
185722
+
Arg
ACG
[Ensembl]
¡û
>C131010813
CP003978
Betaproteobacteria
Candidatus Kinetoplastibacterium crithidii [ex Angomonas deanei [CP003978]
819191
819268
+
Arg
ACG
[Ensembl]
¡û
>W1610606560
LFTA01000018
Betaproteobacteria
Alcaligenaceae bacterium DTU041 [LFTA]
2938
2861
-
Arg
ACG
[ENA]
¡û
>W1610632441
LIPV01000012
Betaproteobacteria
Thiomonas bhubaneswarensis [LIPV]
25613
25536
-
Arg
ACG
[ENA]
¡û
>W1710727847
LFTA01000018
Betaproteobacteria
Alcaligenaceae bacterium DTU041 [LFTA]
2938
2861
-
Arg
ACG
[ENA]
¡û
>W1710766827
LIPV01000012
Betaproteobacteria
Thiomonas bhubaneswarensis [LIPV]
25613
25536
-
Arg
ACG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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