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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.159417 (22 seq.)
>W131170013
ARFF01000011
Bacteroidota
Niabella aurantiaca DSM 17617 [ARFF]
102049
101973
-
Met
CAT
[ENA]
¡û
>W1711501403
MKRO01000237
Bacteroidota
Sphingobacteriales bacterium 41-5 [MKRO]
3805
3729
-
Met
CAT
[ENA]
¡û
>W1711502865
MKTC01000013
Bacteroidota
Bacteroidetes bacterium 37-13 [MKTC]
81377
81301
-
Met
CAT
[ENA]
¡û
>WENV180284150
OBID01017920
[OBID] metagenome; sludge
1635
1561
-
Ile2
CAT
[ENA]
¢þ
>WENV180356521
OBNK01042577
[OBNK] sediment metagenome; sediment
197
123
-
Ile2
CAT
[ENA]
¢þ
>WENV181169926
OEIV010015101
[OEIV] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
1546
1469
-
Ile2
CAT
[ENA]
¢þ
>WENV181188384
OEOE01108793
[OEOE] activated sludge metagenome; Activated Sludge
255
181
-
Ile2
CAT
[ENA]
¢þ
>WENV183621053
OOFT01003864
[OOFT] marine metagenome; sea ice
356
282
-
Ile2
CAT
[ENA]
¢þ
>WENV183728790
PJTQ01000446
[PJTQ] soil metagenome; Soil (3) enriched on wood chips
16397
16323
-
Ile2
CAT
[ENA]
¢þ
>WENV183731501
PJTT01000011
[PJTT] soil metagenome; Soil (2) enriched on wood chips
553677
553751
+
Ile2
CAT
[ENA]
¢þ
>WENV183738351
PJUD01172642
[PJUD] feces metagenome; Chicken feces (3) enriched on wood chips: beechwood xylan treatment
51
125
+
Ile2
CAT
[ENA]
¢þ
>WENV170011246
APMI01052061
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
6135
6209
+
Met
CAT
[ENA]
¢þ
>WENV170011417
APMI01064524
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
1087
1013
-
Met
CAT
[ENA]
¢þ
>WENV170012120
APMI01121944
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
150
76
-
Met
CAT
[ENA]
¢þ
>WENV170289729
CERX01250357
[CERX] marine metagenome genome assembly TARA_068_DCM_0.22-0.45 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
602
526
-
Met
CAT
[ENA]
¢þ
>C181067227
CP022515
Bacteroidota
Arenibacter algicola SMS7 [CP022515]
1566147
1566073
-
Met
CAT
-
¡û
>C181202220
CP031557
Bacteroidota
Flavobacterium psychrotrophum CJ74 [CP031557]
3894102
3894028
-
Met
CAT
-
¡û
>C191115406
CP033918
Bacteroidota
Chryseobacterium sp. G0186 [CP033918]
4046591
4046665
+
Met
CAT
-
¡û
>C191115687
CP033922
Bacteroidota
Chryseobacterium sp. G0162 [CP033922]
1623067
1622993
-
Met
CAT
-
¡û
>C191182105
CP040710
Bacteroidota
Aggregatimonas sangjinii F202Z8 [CP040710]
4343074
4343148
+
Met
CAT
-
¡û
>W1911218404
NRQS01000007
Bacteroidota
Chryseobacterium sp. CH1 [NRQS]
110690
110764
+
Met
CAT
[ENA]
¡û
>C161090545
CP015772
Bacteroidota
Niabella ginsenosidivorans BS26 [CP015772]
4401159
4401235
+
Met
CAT
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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