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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.159467 (6 seq.)
>A171002961
CP003316
Thermoproteota
Pyrobaculum oguniense TE7 [CP003316]
143680
143604
-
Asn
GTT
-
¡û
>WENV180013871
FPIC01006059
[FPIC] soil metagenome; Soil
30835
30759
-
Asn
GTT
[ENA]
¢þ
>At0214
AE009441
Thermoproteota
Pyrobaculum aerophilum str. IM2 [AE009441]
2099023
2099110
+
Asn
GTT
[Ensembl]
¡û
>At0247
CP000660
Thermoproteota
Pyrobaculum arsenaticum DSM 13514 [CP000660]
1755536
1755610
+
Asn
GTT
[Ensembl]
¡û
>At0319
CP000561
Thermoproteota
Pyrobaculum calidifontis JCM 11548 [CP000561]
1088212
1088102
-
Asn
GTT
[Ensembl]
¡û
>At0361
CP000504
Thermoproteota
Pyrobaculum islandicum DSM 4184 [CP000504]
713260
713145
-
Asn
GTT
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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