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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.159518 (78 seq.)
>W1710809808
LKEV01000003
Actinomycetota
Corynebacterium lowii [LKEV]
206370
206296
-
Leu
CAA
[ENA]
¡û
>W1711092393
LTEB01000028
Actinomycetota
Corynebacterium simulans [LTEB]
40412
40488
+
Leu
CAA
[ENA]
¡û
>W1711096812
LTIB01000112
Actinomycetota
Corynebacterium sp. HMSC071F07 [LTIB]
31777
31701
-
Leu
CAA
[ENA]
¡û
>W1711106050
LTRK01000071
Actinomycetota
Corynebacterium sp. HMSC036D03 [LTRK]
61581
61505
-
Leu
CAA
[ENA]
¡û
>W1711110817
LTVX01000009
Actinomycetota
Corynebacterium sp. HMSC076D02 [LTVX]
40428
40504
+
Leu
CAA
[ENA]
¡û
>W1711112394
LTXJ01000055
Actinomycetota
Corynebacterium sp. HMSC077D03 [LTXJ]
40421
40497
+
Leu
CAA
[ENA]
¡û
>W1711185993
LWNV01000050
Actinomycetota
Corynebacterium sp. HMSC08C04 [LWNV]
90160
90084
-
Leu
CAA
[ENA]
¡û
>W1711186309
LWOC01000043
Actinomycetota
Corynebacterium sp. HMSC06G04 [LWOC]
40595
40671
+
Leu
CAA
[ENA]
¡û
>W1711186399
LWOE01000042
Actinomycetota
Corynebacterium sp. HMSC06D04 [LWOE]
62057
61981
-
Leu
CAA
[ENA]
¡û
>W1711186418
LWOF01000018
Actinomycetota
Corynebacterium sp. HMSC06C06 [LWOF]
33036
32960
-
Leu
CAA
[ENA]
¡û
>W1711186652
LWOJ01000075
Actinomycetota
Corynebacterium sp. HMSC05D08 [LWOJ]
47136
47060
-
Leu
CAA
[ENA]
¡û
>C171001952
CP009246
Actinomycetota
Corynebacterium flavescens OJ8 [CP009246]
1220101
1220025
-
Leu
CAA
-
¡û
>C171117454
CP021252
Actinomycetota
Corynebacterium striatum KC-Na-01 [CP021252]
1403267
1403191
-
Leu
CAA
-
¡û
>WENV182646586
OJMC01000009
[OJMC] metagenome; surface
4999
5075
+
Leu
CAA
[ENA]
¡û
>WENV182818797
OJZY01002316
[OJZY] human gut metagenome; human gut
699
775
+
Leu
CAA
[ENA]
¡û
>WENV182835386
OKFN01000012
[OKFN] human gut metagenome; human gut
53007
52931
-
Leu
CAA
[ENA]
¡û
>C181108814
CP024931
Actinomycetota
Corynebacterium striatum 215 [CP024931]
629460
629384
-
Leu
CAA
-
¡û
>C181108823
CP024932
Actinomycetota
Corynebacterium striatum 216 [CP024932]
730767
730843
+
Leu
CAA
-
¡û
>W09122442
ACGE01000051
Actinomycetota
Corynebacterium striatum ATCC 6940 [ACGE]
37399
37323
-
Leu
CAA
[ENA]
¡û
>W1910180453
BJLD01000002
Actinomycetota
Corynebacterium striatum NBRC 15291 [BJLD]
607165
607089
-
Leu
CAA
[ENA]
¡û
>W1910182650
BJNB01000046
Actinomycetota
Corynebacterium flavescens NBRC 14136 [BJNB]
146
70
-
Leu
CAA
[ENA]
¡û
>W1910598682
LBCN01000044
Actinomycetota
Corynebacterium striatum 2023 [LBCN]
179794
179718
-
Leu
CAA
[ENA]
¡û
>W1910640650
LTBF01000017
Actinomycetota
Corynebacterium striatum 2230 [LTBF]
50131
50055
-
Leu
CAA
[ENA]
¡û
>W1910640676
LTBG01000002
Actinomycetota
Corynebacterium striatum 2245 [LTBG]
44017
44093
+
Leu
CAA
[ENA]
¡û
>W1910640725
LTBH01000008
Actinomycetota
Corynebacterium striatum 2247 [LTBH]
554511
554435
-
Leu
CAA
[ENA]
¡û
>W1911204364
NRIL01000014
Actinomycetota
Corynebacterium striatum 2130 [NRIL]
63216
63140
-
Leu
CAA
[ENA]
¡û
>W1911204428
NRIM01000016
Actinomycetota
Corynebacterium striatum 2237 [NRIM]
96607
96531
-
Leu
CAA
[ENA]
¡û
>W1911204490
NRIN01000017
Actinomycetota
Corynebacterium striatum 2296 [NRIN]
175781
175705
-
Leu
CAA
[ENA]
¡û
>W1911204549
NRIO01000014
Actinomycetota
Corynebacterium striatum 2308 [NRIO]
99948
99872
-
Leu
CAA
[ENA]
¡û
>W1911204616
NRIP01000019
Actinomycetota
Corynebacterium striatum 2425 [NRIP]
84469
84393
-
Leu
CAA
[ENA]
¡û
>W1911390867
NWBP01000022
Actinomycetota
Corynebacterium accolens AH4003 [NWBP]
40707
40781
+
Leu
CAA
[ENA]
¡û
>W2010094279
BJLD01000002
Actinomycetota
Corynebacterium striatum NBRC 15291 [BJLD]
607165
607089
-
Leu
CAA
[ENA]
¡û
>W2010096265
BJNB01000046
Actinomycetota
Corynebacterium flavescens NBRC 14136 [BJNB]
146
70
-
Leu
CAA
[ENA]
¡û
>W2010149421
CAACYF010000005
Actinomycetota
Corynebacterium striatum 3012STDY7069329 [CAACYF]
422569
422493
-
Leu
CAA
[ENA]
¡û
>W2010769351
LBCN01000044
Actinomycetota
Corynebacterium striatum 2023 [LBCN]
179794
179718
-
Leu
CAA
[ENA]
¡û
>W2010785895
LTBF01000017
Actinomycetota
Corynebacterium striatum 2230 [LTBF]
50131
50055
-
Leu
CAA
[ENA]
¡û
>W2010785921
LTBG01000002
Actinomycetota
Corynebacterium striatum 2245 [LTBG]
44017
44093
+
Leu
CAA
[ENA]
¡û
>W2010785970
LTBH01000008
Actinomycetota
Corynebacterium striatum 2247 [LTBH]
554511
554435
-
Leu
CAA
[ENA]
¡û
>W2011013433
NOVQ01000009
Actinomycetota
Corynebacterium sp. LK14 [NOVQ]
630927
630851
-
Leu
CAA
[ENA]
¡û
>W2011049737
NRIL01000014
Actinomycetota
Corynebacterium striatum 2130 [NRIL]
63216
63140
-
Leu
CAA
[ENA]
¡û
>W2011049801
NRIM01000016
Actinomycetota
Corynebacterium striatum 2237 [NRIM]
96607
96531
-
Leu
CAA
[ENA]
¡û
>W2011049863
NRIN01000017
Actinomycetota
Corynebacterium striatum 2296 [NRIN]
175781
175705
-
Leu
CAA
[ENA]
¡û
>W2011049922
NRIO01000014
Actinomycetota
Corynebacterium striatum 2308 [NRIO]
99948
99872
-
Leu
CAA
[ENA]
¡û
>W2011049989
NRIP01000019
Actinomycetota
Corynebacterium striatum 2425 [NRIP]
84469
84393
-
Leu
CAA
[ENA]
¡û
>W2011133405
NWBP01000022
Actinomycetota
Corynebacterium accolens AH4003 [NWBP]
40707
40781
+
Leu
CAA
[ENA]
¡û
>W2011355775
RAQW01000016
Actinomycetota
Corynebacterium striatum LK37 [RAQW]
36875
36951
+
Leu
CAA
[ENA]
¡û
>W2011530952
SBIF01000010
Actinomycetota
Corynebacterium striatum WP1a [SBIF]
62402
62326
-
Leu
CAA
[ENA]
¡û
>W2011821790
UFXV01000002
Actinomycetota
Corynebacterium striatum NCTC764 [UFXV]
1590653
1590729
+
Leu
CAA
[ENA]
¡û
>W2011822608
UFYO01000001
Actinomycetota
Corynebacterium striatum NCTC9755 [UFYO]
1534567
1534643
+
Leu
CAA
[ENA]
¡û
>W2011977694
VCOY01000005
Actinomycetota
Corynebacterium striatum NSCs27 [VCOY]
42075
42151
+
Leu
CAA
[ENA]
¡û
>W2011977758
VCOZ01000017
Actinomycetota
Corynebacterium striatum CSc27 [VCOZ]
42105
42181
+
Leu
CAA
[ENA]
¡û
>W2011977828
VCPA01000017
Actinomycetota
Corynebacterium striatum NSCs20 [VCPA]
33124
33048
-
Leu
CAA
[ENA]
¡û
>W2011977884
VCPB01000018
Actinomycetota
Corynebacterium striatum CSc20 [VCPB]
33124
33048
-
Leu
CAA
[ENA]
¡û
>W2012206610
VXKK01000027
Actinomycetota
Corynebacterium flavescens CCUG 28791T [VXKK]
265
189
-
Leu
CAA
[ENA]
¡û
>W2110003007
AAXWEE010000008
Actinomycetota
Corynebacterium striatum [AAXWEE]
37110
37186
+
Leu
CAA
[ENA]
¡û
>W2110003061
AAXWEF010000014
Actinomycetota
Corynebacterium striatum [AAXWEF]
42029
42105
+
Leu
CAA
[ENA]
¡û
>W2110003109
AAXWEH010000005
Actinomycetota
Corynebacterium striatum [AAXWEH]
36847
36923
+
Leu
CAA
[ENA]
¡û
>W2110003170
AAXWEK010000006
Actinomycetota
Corynebacterium striatum [AAXWEK]
42149
42225
+
Leu
CAA
[ENA]
¡û
>W2110004510
AAXWGD010000006
Actinomycetota
Corynebacterium striatum [AAXWGD]
37176
37252
+
Leu
CAA
[ENA]
¡û
>C211243646
CP068157
Actinomycetota
Corynebacterium striatum FDAARGOS_1116 [CP068157]
184714
184638
-
Leu
CAA
-
¡û
>C211243675
CP068158
Actinomycetota
Corynebacterium striatum FDAARGOS_1115 [CP068158]
2845653
2845577
-
Leu
CAA
-
¡û
>C211262269
CP069514
Actinomycetota
Corynebacterium striatum FDAARGOS_1197 [CP069514]
1898152
1898076
-
Leu
CAA
-
¡û
>W2110755669
PGGF01000006
Actinomycetota
Corynebacterium striatum 1954 [PGGF]
450675
450599
-
Leu
CAA
[ENA]
¡û
>W2110755720
PGGG01000009
Actinomycetota
Corynebacterium striatum 2038 [PGGG]
146709
146785
+
Leu
CAA
[ENA]
¡û
>W2310016971
BQNM01000001
Actinomycetota
Corynebacterium striatum CE91-St29 [BQNM]
1568745
1568821
+
Leu
CAA
[ENA]
¡û
>W1510562575
CTEG01000056
Actinomycetota
Corynebacterium striatum BM4687 [CTEG]
37163
37239
+
Leu
CAA
[ENA]
¡û
>W1511438051
JULV01000032
Actinomycetota
Corynebacterium striatum 963_CAUR [JULV]
62416
62340
-
Leu
CAA
[ENA]
¡û
>W1511438093
JULW01000025
Actinomycetota
Corynebacterium striatum 962_CAUR [JULW]
62419
62343
-
Leu
CAA
[ENA]
¡û
>W1511443087
JUSN01000100
Actinomycetota
Corynebacterium striatum 797_CAUR [JUSN]
38852
38928
+
Leu
CAA
[ENA]
¡û
>W1511449462
JVBA01000138
Actinomycetota
Corynebacterium striatum 587_CAUR [JVBA]
62407
62331
-
Leu
CAA
[ENA]
¡û
>W1511451293
JVCW01000085
Actinomycetota
Corynebacterium striatum 542_CAUR [JVCW]
42293
42369
+
Leu
CAA
[ENA]
¡û
>W1511467853
JVTL01000051
Actinomycetota
Corynebacterium striatum 1329_CAUR [JVTL]
26275
26199
-
Leu
CAA
[ENA]
¡û
>W1511467932
JVTN01000052
Actinomycetota
Corynebacterium striatum 1327_CAUR [JVTN]
26275
26199
-
Leu
CAA
[ENA]
¡û
>W1511585601
LAYR01000019
Actinomycetota
Corynebacterium striatum 1961 [LAYR]
13482
13406
-
Leu
CAA
[ENA]
¡û
>C161074795
CP014634
Actinomycetota
Corynebacterium simulans PES1 [CP014634]
2705405
2705329
-
Leu
CAA
[Ensembl]
¡û
>C161074872
CP014635
Actinomycetota
Corynebacterium simulans Wattiau [CP014635]
122904
122828
-
Leu
CAA
-
¡û
>W1610673863
LKEV01000003
Actinomycetota
Corynebacterium lowii [LKEV]
206370
206296
-
Leu
CAA
[ENA]
¡û
>W1610926431
LTEB01000028
Actinomycetota
Corynebacterium simulans [LTEB]
40412
40488
+
Leu
CAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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