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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
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1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.159537 (39 seq.)
>W1710785741
LJIC01000170
Alphaproteobacteria
Rhodopseudomonas sp. AAP120 [LJIC]
15482
15559
+
Pro
GGG
[ENA]
¡û
>W1711502232
MKSM01000007
Alphaproteobacteria
Nitrobacter sp. 62-23 [MKSM]
16519
16442
-
Pro
GGG
[ENA]
¡û
>W1711783541
MVOD01000020
Alphaproteobacteria
Rhodopseudomonas palustris [MVOD]
263532
263455
-
Pro
GGG
[ENA]
¡û
>W1711795364
MWPQ01000031
Alphaproteobacteria
Nitrobacter vulgaris [MWPQ]
31841
31918
+
Pro
GGG
[ENA]
¡û
>W131227225
AUEZ01000022
Alphaproteobacteria
Bradyrhizobium sp. Ai1a-2 [AUEZ]
16340
16417
+
Pro
GGG
[ENA]
¡û
>C014925
CP000319
Alphaproteobacteria
Nitrobacter hamburgensis X14 [CP000319]
1792083
1792160
+
Pro
GGG
[Ensembl]
¡û
>C015358
CP000115
Alphaproteobacteria
Nitrobacter winogradskyi Nb-255 [CP000115]
1533855
1533932
+
Pro
GGG
[Ensembl]
¡û
>C018867
CP000463
Alphaproteobacteria
Rhodopseudomonas palustris [CP000463]
3181489
3181412
-
Pro
GGG
[Ensembl]
¡û
>C018893
CP000301
Alphaproteobacteria
Rhodopseudomonas palustris [CP000301]
2907932
2908009
+
Pro
GGG
[Ensembl]
¡û
>C018938
CP000283
Alphaproteobacteria
Rhodopseudomonas palustris BisB5 [CP000283]
3003929
3004006
+
Pro
GGG
[Ensembl]
¡û
>C018989
BX571963
Alphaproteobacteria
Rhodopseudomonas palustris [BX571963]
3114233
3114310
+
Pro
GGG
[Ensembl]
¡û
>C019041
CP000250
Alphaproteobacteria
Rhodopseudomonas palustris HaA2 [CP000250]
3031532
3031609
+
Pro
GGG
[Ensembl]
¡û
>w013001
AAMY01000017
Alphaproteobacteria
Nitrobacter sp. Nb-311A [AAMY]
60700
60621
-
Pro
GGG
[ENA]
¡û
>W141150702
AXAP01000006
Alphaproteobacteria
Bradyrhizobium elkanii WSM2783 [AXAP]
173130
173207
+
Pro
GGG
[ENA]
¡û
>W141151072
AXAU01000001
Alphaproteobacteria
Bradyrhizobium murdochi WSM1741 [AXAU]
295451
295528
+
Pro
GGG
[ENA]
¡û
>W141223316
BADD01000457
Alphaproteobacteria
Rhodopseudomonas sp. B29 [BADD]
507
430
-
Pro
GGG
[ENA]
¡û
>WENV170707201
LNAP01015056
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
5230
5153
-
Pro
GGG
[ENA]
¢þ
>C181041922
CP019967
Alphaproteobacteria
Rhodopseudomonas palustris YSC3 [CP019967]
3088460
3088383
-
Pro
GGG
-
¡û
>W09103002
AAIS01000002
Alphaproteobacteria
Nitrobacter hamburgensis X14 [AAIS]
1048844
1048767
-
Pro
GGG
[ENA]
¡û
>W09103834
AAKZ01000011
Alphaproteobacteria
Rhodopseudomonas palustris BisB5 [AAKZ]
146259
146336
+
Pro
GGG
[ENA]
¡û
>W09103865
AALA01000006
Alphaproteobacteria
Rhodopseudomonas palustris BisA53 [AALA]
65822
65745
-
Pro
GGG
[ENA]
¡û
>W09104375
AALQ01000003
Alphaproteobacteria
Rhodopseudomonas palustris HaA2 [AALQ]
517041
516964
-
Pro
GGG
[ENA]
¡û
>W09104405
AALR01000002
Alphaproteobacteria
Rhodopseudomonas palustris BisB18 [AALR]
374702
374625
-
Pro
GGG
[ENA]
¡û
>W09107573
ABJR01000001
Alphaproteobacteria
Rhodopseudomonas palustris TIE-1 [ABJR]
1271523
1271600
+
Pro
GGG
[ENA]
¡û
>W1910182837
BJNF01000030
Alphaproteobacteria
Nitrobacter winogradskyi NBRC 14297 [BJNF]
13237
13160
-
Pro
GGG
[ENA]
¡û
>W1911219134
NRSI01000001
Alphaproteobacteria
Rhodopseudomonas palustris DSM 126 [NRSI]
482852
482775
-
Pro
GGG
[ENA]
¡û
>W1911629578
PSRS01000519
Alphaproteobacteria
Bradyrhizobium sp. Leo121 [PSRS]
478
555
+
Pro
GGG
[ENA]
¡û
>W1911760573
QWVU01000031
Alphaproteobacteria
Rhodopseudomonas palustris R1 [QWVU]
7628
7705
+
Pro
GGG
[ENA]
¡û
>W1911809176
QYYC01000036
Alphaproteobacteria
Rhodopseudomonas palustris 2.1.37 [QYYC]
264183
264106
-
Pro
GGG
[ENA]
¡û
>W1911809205
QYYD01000001
Alphaproteobacteria
Rhodopseudomonas palustris 2.1.18 [QYYD]
12784
12707
-
Pro
GGG
[ENA]
¡û
>W1810679424
QKQS01000013
Alphaproteobacteria
Rhodopseudomonas palustris XCP [QKQS]
18945
19022
+
Pro
GGG
[ENA]
¡û
>W1810787491
QRDT01000001
Alphaproteobacteria
Rhodopseudomonas pentothenatexigens JA575 [QRDT]
248160
248083
-
Pro
GGG
[ENA]
¡û
>W1810884388
QUMP01000001
Alphaproteobacteria
Rhodopseudomonas thermotolerans JA576,NBRC 108863,KCTC 15144 [QUMP]
248160
248083
-
Pro
GGG
[ENA]
¡û
>W10112841
ADFI01000033
Alphaproteobacteria
Rhodopseudomonas palustris DX-1 [ADFI]
6913
6990
+
Pro
GGG
[ENA]
¡û
>C10110750
CP001096
Alphaproteobacteria
Rhodopseudomonas palustris TIE-1 [CP001096]
3286993
3287070
+
Pro
GGG
[Ensembl]
¡û
>W11116068
ADFI01000033
Alphaproteobacteria
Rhodopseudomonas palustris DX-1 [ADFI]
6913
6990
+
Pro
GGG
[ENA]
¡û
>C11118773
CP002418
Alphaproteobacteria
Rhodopseudomonas palustris [CP002418]
2953718
2953641
-
Pro
GGG
[Ensembl]
¡û
>W1610649547
LJIC01000170
Alphaproteobacteria
Rhodopseudomonas sp. AAP120 [LJIC]
15482
15559
+
Pro
GGG
[ENA]
¡û
>W1710548412
FODT01000005
Alphaproteobacteria
Rhodopseudomonas pseudopalustris [FODT]
152503
152580
+
Pro
GGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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