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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.159571 (17 seq.)
>W141174545
AYDB01000004
Gammaproteobacteria
Salmonella enterica subsp. enterica serovar Agona str. 400095 18 [AYDB]
25903
25826
-
Met
CAT
[ENA]
¡û
>W08002157
ABEL01000001
Gammaproteobacteria
Salmonella enterica subsp. enterica serovar Heidelberg str. SL486 [ABEL]
483177
483103
-
Met
CAT
[ENA]
¡û
>W141235792
BAYS01000027
Gammaproteobacteria
Vibrio sp. JCM 18905 [BAYS]
393
316
-
Met
CAT
[ENA]
¡û
>C191196363
LR134138
Gammaproteobacteria
Kluyvera intermedia NCTC12125 [LR134138]
2109974
2110051
+
Met
CAT
-
¡û
>C191198335
LR134162
Gammaproteobacteria
Klebsiella pneumoniae NCTC13635 [LR134162]
4188926
4188849
-
Met
CAT
-
¡û
>C191198339
LR134162
Gammaproteobacteria
Klebsiella pneumoniae NCTC13635 [LR134162]
4188522
4188445
-
Met
CAT
-
¡û
>C151021768
CP007274
Gammaproteobacteria
Salmonella enterica subsp. enterica serovar Enteritidis str. SA20093266 [CP007274]
3727410
3727333
-
Met
CAT
-
¡û
>C151021772
CP007274
Gammaproteobacteria
Salmonella enterica subsp. enterica serovar Enteritidis str. SA20093266 [CP007274]
3727016
3726939
-
Met
CAT
-
¡û
>W1510671285
CWON01000002
Gammaproteobacteria
Vibrio cholerae 4605 [CWON]
828
751
-
Met
CAT
[ENA]
¡û
>W1510671525
CWOR01000021
Gammaproteobacteria
Vibrio cholerae A180 [CWOR]
134
57
-
Met
CAT
[ENA]
¡û
>W1510672450
CWPK01000101
Gammaproteobacteria
Vibrio cholerae 4122 [CWPK]
10224
10301
+
Met
CAT
[ENA]
¡û
>W1510674768
CWRK01000002
Gammaproteobacteria
Vibrio cholerae 4551 [CWRK]
346243
346166
-
Met
CAT
[ENA]
¡û
>WENV051915
AACY022990772
Marine microbial communities from Global Ocean Sampling (GOS)
1
80
+
Met
CAT
[ENA]
>W1610048238
BBDZ01000027
Gammaproteobacteria
Vibrio sp. JCM 18905 [BBDZ]
393
316
-
Met
CAT
[ENA]
¡û
>W1610638317
LIXO01000067
Gammaproteobacteria
Salmonella enterica subsp. enterica serovar Moscow str. SA20061414 [LIXO]
356
279
-
Met
CAT
[ENA]
¡û
>W1710044748
BBDZ01000027
Gammaproteobacteria
Vibrio sp. JCM 18905 [BBDZ]
393
316
-
Met
CAT
[ENA]
¡û
>W1710774148
LIXO01000067
Gammaproteobacteria
Salmonella enterica subsp. enterica serovar Moscow str. SA20061414 [LIXO]
356
279
-
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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