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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.160243 (46 seq.)
>W1710821486
LKTL01000013
Gammaproteobacteria
Shewanella sp. P1-14-1 [LKTL]
145779
145694
-
Leu
TAA
[ENA]
¡û
>W1710821511
LKTL01000049
Gammaproteobacteria
Shewanella sp. P1-14-1 [LKTL]
86
1
-
Leu
TAA
[ENA]
¡û
>W1710821531
LKTL01000144
Gammaproteobacteria
Shewanella sp. P1-14-1 [LKTL]
86
1
-
Leu
TAA
[ENA]
¡û
>W1711273422
LZFV01000001
Gammaproteobacteria
Shewanella sp. UCD-FRSSP16_17 [LZFV]
541045
540960
-
Leu
TAA
[ENA]
¡û
>W1711273447
LZFV01000005
Gammaproteobacteria
Shewanella sp. UCD-FRSSP16_17 [LZFV]
22590
22675
+
Leu
TAA
[ENA]
¡û
>W1711273448
LZFV01000005
Gammaproteobacteria
Shewanella sp. UCD-FRSSP16_17 [LZFV]
28801
28886
+
Leu
TAA
[ENA]
¡û
>W1711624541
MPHK01000001
Gammaproteobacteria
Shewanella sp. UCD-KL21 [MPHK]
455802
455717
-
Leu
TAA
[ENA]
¡û
>W1711624570
MPHK01000008
Gammaproteobacteria
Shewanella sp. UCD-KL21 [MPHK]
116828
116913
+
Leu
TAA
[ENA]
¡û
>W1711624571
MPHK01000008
Gammaproteobacteria
Shewanella sp. UCD-KL21 [MPHK]
120536
120621
+
Leu
TAA
[ENA]
¡û
>C171108579
CP020472
Gammaproteobacteria
Shewanella japonica KCTC 22435 [CP020472]
2445123
2445208
+
Leu
TAA
-
¡û
>C171108624
CP020472
Gammaproteobacteria
Shewanella japonica KCTC 22435 [CP020472]
3176432
3176347
-
Leu
TAA
-
¡û
>C171108625
CP020472
Gammaproteobacteria
Shewanella japonica KCTC 22435 [CP020472]
3170094
3170009
-
Leu
TAA
-
¡û
>WENV170023818
BCQL01004994
[BCQL] museum specimen metagenome; Liagora japonica specimen isolated from Misaki, Miura, Kanagawa
143
228
+
Leu
TAA
[ENA]
¢þ
>WENV170024188
BCQL01029179
[BCQL] museum specimen metagenome; Liagora japonica specimen isolated from Misaki, Miura, Kanagawa
1112
1197
+
Leu
TAA
[ENA]
¢þ
>WENV170024826
BCQL01137070
[BCQL] museum specimen metagenome; Liagora japonica specimen isolated from Misaki, Miura, Kanagawa
30
115
+
Leu
TAA
[ENA]
¢þ
>WENV170025161
BCQL01235828
[BCQL] museum specimen metagenome; Liagora japonica specimen isolated from Misaki, Miura, Kanagawa
374
289
-
Leu
TAA
[ENA]
¢þ
>C191155987
CP037952
Gammaproteobacteria
Parashewanella spongiae HJ039 [CP037952]
2385068
2385153
+
Leu
TAA
-
¡û
>C191155993
CP037952
Gammaproteobacteria
Parashewanella spongiae HJ039 [CP037952]
2633052
2633137
+
Leu
TAA
-
¡û
>W1910676728
MCTV01000017
Gammaproteobacteria
Shewanella sp. 10N.286.52.C2 [MCTV]
17514
17599
+
Leu
TAA
[ENA]
¡û
>W1910676729
MCTV01000017
Gammaproteobacteria
Shewanella sp. 10N.286.52.C2 [MCTV]
21942
22027
+
Leu
TAA
[ENA]
¡û
>W1910676744
MCTV01000039
Gammaproteobacteria
Shewanella sp. 10N.286.52.C2 [MCTV]
164145
164230
+
Leu
TAA
[ENA]
¡û
>W1910676919
MCTY01000091
Gammaproteobacteria
Shewanella sp. 10N.286.52.B9 [MCTY]
98376
98461
+
Leu
TAA
[ENA]
¡û
>W1910676947
MCTY01000174
Gammaproteobacteria
Shewanella sp. 10N.286.52.B9 [MCTY]
7307
7222
-
Leu
TAA
[ENA]
¡û
>W1910676948
MCTY01000174
Gammaproteobacteria
Shewanella sp. 10N.286.52.B9 [MCTY]
3234
3149
-
Leu
TAA
[ENA]
¡û
>W1910677455
MCUF01000023
Gammaproteobacteria
Shewanella sp. 10N.286.51.B7 [MCUF]
93294
93209
-
Leu
TAA
[ENA]
¡û
>W1910677456
MCUF01000023
Gammaproteobacteria
Shewanella sp. 10N.286.51.B7 [MCUF]
87622
87537
-
Leu
TAA
[ENA]
¡û
>W1910677459
MCUF01000024
Gammaproteobacteria
Shewanella sp. 10N.286.51.B7 [MCUF]
175822
175907
+
Leu
TAA
[ENA]
¡û
>W1910679471
MCVG01000002
Gammaproteobacteria
Shewanella sp. 10N.286.48.B5 [MCVG]
10030
9945
-
Leu
TAA
[ENA]
¡û
>W1910679527
MCVG01000156
Gammaproteobacteria
Shewanella sp. 10N.286.48.B5 [MCVG]
7972
7887
-
Leu
TAA
[ENA]
¡û
>W1910679528
MCVG01000156
Gammaproteobacteria
Shewanella sp. 10N.286.48.B5 [MCVG]
3368
3283
-
Leu
TAA
[ENA]
¡û
>W1910679634
MCVI01000001
Gammaproteobacteria
Shewanella sp. 10N.286.48.A6 [MCVI]
110
25
-
Leu
TAA
[ENA]
¡û
>W1910679675
MCVI01000025
Gammaproteobacteria
Shewanella sp. 10N.286.48.A6 [MCVI]
14120
14035
-
Leu
TAA
[ENA]
¡û
>W1911581897
PGVH01000013
Gammaproteobacteria
Shewanella sp. OPT22 [PGVH]
181024
180939
-
Leu
TAA
[ENA]
¡û
>W1911581898
PGVH01000013
Gammaproteobacteria
Shewanella sp. OPT22 [PGVH]
180899
180814
-
Leu
TAA
[ENA]
¡û
>W1911581952
PGVH01000043
Gammaproteobacteria
Shewanella sp. OPT22 [PGVH]
332084
331999
-
Leu
TAA
[ENA]
¡û
>W1911710139
QPQU01000011
Gammaproteobacteria
Shewanella japonica KCTC 12235 [QPQU]
179250
179165
-
Leu
TAA
[ENA]
¡û
>W1911710146
QPQU01000013
Gammaproteobacteria
Shewanella japonica KCTC 12235 [QPQU]
21094
21179
+
Leu
TAA
[ENA]
¡û
>W1911710147
QPQU01000013
Gammaproteobacteria
Shewanella japonica KCTC 12235 [QPQU]
27424
27509
+
Leu
TAA
[ENA]
¡û
>W1911809444
QYYH01000006
Gammaproteobacteria
Parashewanella spongiae KCTC 22492 [QYYH]
44943
44858
-
Leu
TAA
[ENA]
¡û
>W1911809481
QYYH01000052
Gammaproteobacteria
Parashewanella spongiae KCTC 22492 [QYYH]
13838
13753
-
Leu
TAA
[ENA]
¡û
>W1610685448
LKTL01000013
Gammaproteobacteria
Shewanella sp. P1-14-1 [LKTL]
145779
145694
-
Leu
TAA
[ENA]
¡û
>W1610685473
LKTL01000049
Gammaproteobacteria
Shewanella sp. P1-14-1 [LKTL]
86
1
-
Leu
TAA
[ENA]
¡û
>W1610685493
LKTL01000144
Gammaproteobacteria
Shewanella sp. P1-14-1 [LKTL]
86
1
-
Leu
TAA
[ENA]
¡û
>W1611032771
LZFV01000001
Gammaproteobacteria
Shewanella sp. UCD-FRSSP16_17 [LZFV]
541045
540960
-
Leu
TAA
[ENA]
¡û
>W1611032796
LZFV01000005
Gammaproteobacteria
Shewanella sp. UCD-FRSSP16_17 [LZFV]
22590
22675
+
Leu
TAA
[ENA]
¡û
>W1611032797
LZFV01000005
Gammaproteobacteria
Shewanella sp. UCD-FRSSP16_17 [LZFV]
28801
28886
+
Leu
TAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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