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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.160578 (14 seq.)
>C171074536
CP018190
Alphaproteobacteria
Granulibacter bethesdensis NIH5.1 [CP018190]
662518
662603
+
Leu
GAG
-
¡û
>C171074588
CP018191
Alphaproteobacteria
Granulibacter bethesdensis NIH9.1 [CP018191]
672347
672432
+
Leu
GAG
-
¡û
>C171074640
CP018192
Alphaproteobacteria
Granulibacter bethesdensis NIH6.1 [CP018192]
671174
671259
+
Leu
GAG
-
¡û
>C171074692
CP018193
Alphaproteobacteria
Granulibacter bethesdensis NIH7.1 [CP018193]
668967
669052
+
Leu
GAG
-
¡û
>C171074744
CP018194
Alphaproteobacteria
Granulibacter bethesdensis NIH8.1 [CP018194]
672348
672433
+
Leu
GAG
-
¡û
>C171074796
CP018195
Alphaproteobacteria
Granulibacter bethesdensis NIH1.4 [CP018195]
662577
662662
+
Leu
GAG
-
¡û
>C009818
CP000394
Alphaproteobacteria
Granulibacter bethesdensis CGDNIH1 [CP000394]
662572
662657
+
Leu
GAG
[Ensembl]
¡û
>WENV180100561
OAOO01006243
[OAOO] marine metagenome; ENVO:00002010
251
167
-
Leu
GAG
[ENA]
¢þ
>W141224545
BAIN01000001
Alphaproteobacteria
Acetobacter papayae JCM 25143 [BAIN]
24978
25063
+
Leu
GAG
[ENA]
¡û
>WENV170669649
LAHS01001063
[LAHS] activated sludge metagenome; sample C-1; Sludge from hydrolytic chamber (first chamber) of Anaerobic Baffled Reactor over
48215
48300
+
Leu
GAG
[ENA]
¢þ
>W1910182351
BJMV01000001
Alphaproteobacteria
Acetobacter peroxydans NBRC 13755 [BJMV]
340077
340162
+
Leu
GAG
[ENA]
¡û
>C151004008
CP003181
Alphaproteobacteria
Granulibacter bethesdensis NIH3.1 [CP003181]
665163
665248
+
Leu
GAG
[Ensembl]
¡û
>C151004060
CP003182
Alphaproteobacteria
Granulibacter bethesdensis CGDNIH4 [CP003182]
669088
669173
+
Leu
GAG
[Ensembl]
¡û
>C151004112
CP003183
Alphaproteobacteria
Granulibacter bethesdensis NIH2.1 [CP003183]
662373
662458
+
Leu
GAG
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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