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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.160843 (37 seq.)
>A171000203
CP000855
Euryarchaeota
Thermococcus onnurineus NA1 [CP000855]
1385181
1385258
+
Gly
CCC
-
¡û
>A171000489
CP001398
Euryarchaeota
Thermococcus gammatolerans EJ3 EJ3; DSM 15229 [CP001398]
1853611
1853688
+
Gly
CCC
-
¡û
>A171000682
CP001463
Euryarchaeota
Thermococcus sibiricus MM 739 [CP001463]
356773
356850
+
Gly
TCC
-
¡û
>A171000688
CP001463
Euryarchaeota
Thermococcus sibiricus MM 739 [CP001463]
429277
429354
+
Gly
CCC
-
¡û
>A171002587
CP002920
Euryarchaeota
Thermococcus sp. 4557 [CP002920]
1526119
1526042
-
Gly
CCC
-
¡û
>A171002674
CP002952
Euryarchaeota
Thermococcus sp. AM4 [CP002952]
1762988
1762911
-
Gly
CCC
-
¡û
>A171003327
CP003651
Euryarchaeota
Thermococcus cleftensis CL1 [CP003651]
1186528
1186451
-
Gly
CCC
-
¡û
>A171004231
CP007140
Euryarchaeota
Thermococcus guaymasensis DSM 11113 [CP007140]
984140
984063
-
Gly
CCC
-
¡û
>A171004469
CP008887
Euryarchaeota
Thermococcus eurythermalis A501 [CP008887]
270303
270226
-
Gly
CCC
-
¡û
>A171006579
CP014750
Euryarchaeota
Thermococcus peptonophilus OG-1 [CP014750]
889842
889919
+
Gly
CCC
-
¡û
>A171006673
CP015520
Euryarchaeota
Thermococcus piezophilus CDGS [CP015520]
867467
867390
-
Gly
CCC
-
¡û
>A171007106
CP021848
Euryarchaeota
Thermococcus sp. 5-4 [CP021848]
1519383
1519460
+
Gly
CCC
-
¡û
>At1962
AP006878
Euryarchaeota
Thermococcus kodakarensis KOD1 [AP006878]
1931485
1931408
-
Gly
CCC
[Ensembl]
¡û
>WENV170675976
LDZQ01001547
[LDZQ] terrestrial metagenome; oil reservoir sample I2
11912
11989
+
Gly
CCC
[ENA]
¢þ
>WENV170676191
LDZR01001524
[LDZR] terrestrial metagenome; oil reservoir sample K2
2547
2470
-
Gly
CCC
[ENA]
¢þ
>WENV170676297
LDZR01002225
[LDZR] terrestrial metagenome; oil reservoir sample K2
14034
13957
-
Gly
TCC
[ENA]
¢þ
>WENV170676300
LDZR01002226
[LDZR] terrestrial metagenome; oil reservoir sample K2
56775
56698
-
Gly
CCC
[ENA]
¢þ
>WENV170676732
LDZS01002058
[LDZS] terrestrial metagenome; oil reservoir sample K3
8949
9026
+
Gly
CCC
[ENA]
¢þ
>W1910200311
FJMQ01000081
Euryarchaeota
Thermococcus litoralis [FJMQ]
28929
29006
+
Gly
CCC
[ENA]
¡û
>W1910230001
FOIW01000003
Euryarchaeota
Thermococcus thioreducens OGL-20 [FOIW]
209676
209753
+
Gly
CCC
[ENA]
¡û
>W1910597291
LANF01000018
Euryarchaeota
Palaeococcus ferrophilus DSM 13482 [LANF]
773
850
+
Gly
TCC
[ENA]
¡û
>W1610000874
ABXN01000010
Euryarchaeota
Thermococcus sp. AM4 [ABXN]
63082
63005
-
Gly
CCC
[ENA]
¡û
>W1610004915
AHVB01000025
Euryarchaeota
Thermococcus litoralis DSM 5473 [AHVB]
35951
36028
+
Gly
CCC
[ENA]
¡û
>W1610005288
AJLF01000001
Euryarchaeota
Thermococcus zilligii AN1 [AJLF]
90627
90550
-
Gly
CCC
[ENA]
¡û
>W1610005308
AJLF01000003
Euryarchaeota
Thermococcus zilligii AN1 [AJLF]
84213
84290
+
Gly
TCC
[ENA]
¡û
>W1610005564
AKID01000012
Euryarchaeota
Thermococcus sp. PK [AKID]
1860
1783
-
Gly
CCC
[ENA]
¡û
>W1610045082
BBBB01000012
Euryarchaeota
Thermococcus celer JCM 8558 [BBBB]
20475
20398
-
Gly
CCC
[ENA]
¡û
>W1610045156
BBBE01000001
Euryarchaeota
Thermococcus peptonophilus JCM 9653 [BBBE]
364999
364922
-
Gly
CCC
[ENA]
¡û
>W1610046829
BBCU01000009
Euryarchaeota
Thermococcus sp. JCM 11816 [BBCU]
95672
95749
+
Gly
CCC
[ENA]
¡û
>W1610548875
JXCG01000004
Euryarchaeota
Thermococcus sp. EP1 [JXCG]
139710
139633
-
Gly
TCC
[ENA]
¡û
>W1610548881
JXCG01000004
Euryarchaeota
Thermococcus sp. EP1 [JXCG]
63975
63898
-
Gly
CCC
[ENA]
¡û
>W1610612438
LGET01000006
Euryarchaeota
Thermococcales archaeon 44_46 [LGET]
11912
11989
+
Gly
CCC
[ENA]
¡û
>W1610612802
LGFD01000004
Euryarchaeota
Thermococcus sibiricus [LGFD]
14034
13957
-
Gly
TCC
[ENA]
¡û
>W1610612805
LGFD01000005
Euryarchaeota
Thermococcus sibiricus [LGFD]
56775
56698
-
Gly
CCC
[ENA]
¡û
>W1610613040
LGFJ01000014
Euryarchaeota
Thermococcus sp. 40_45 [LGFJ]
5392
5315
-
Gly
TCC
[ENA]
¡û
>W1610613044
LGFJ01000029
Euryarchaeota
Thermococcus sp. 40_45 [LGFJ]
8949
9026
+
Gly
CCC
[ENA]
¡û
>W1610717943
LLYW01000044
Euryarchaeota
Thermococcus celericrescens DSM 17994 [LLYW]
488
565
+
Gly
CCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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