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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
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Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.160996 (81 seq.)
>A171003607
CP004144
Euryarchaeota
Methanosarcina mazei Tuc01 [CP004144]
1028646
1028571
-
Arg
CCT
-
¡û
>A171004629
CP009503
Euryarchaeota
Methanosarcina sp. WWM596 [CP009503]
2537193
2537268
+
Arg
CCT
-
¡û
>A171004685
CP009504
Euryarchaeota
Methanosarcina sp. WH1 [CP009504]
3584414
3584339
-
Arg
CCT
-
¡û
>A171004794
CP009506
Euryarchaeota
Methanosarcina siciliae T4/M [CP009506]
4568300
4568223
-
Arg
CCT
-
¡û
>A171004847
CP009507
Euryarchaeota
Methanosarcina siciliae HI350 [CP009507]
4513321
4513244
-
Arg
CCT
-
¡û
>A171004904
CP009508
Euryarchaeota
Methanosarcina siciliae C2J [CP009508]
4965962
4965885
-
Arg
CCT
-
¡û
>A171004930
CP009509
Euryarchaeota
Methanosarcina mazei WWM610 [CP009509]
346647
346722
+
Arg
CCT
-
¡û
>A171004982
CP009511
Euryarchaeota
Methanosarcina mazei SarPi [CP009511]
344681
344756
+
Arg
CCT
-
¡û
>A171005034
CP009512
Euryarchaeota
Methanosarcina mazei S-6 [CP009512]
341707
341782
+
Arg
CCT
-
¡û
>A171005086
CP009513
Euryarchaeota
Methanosarcina mazei LYC [CP009513]
342919
342994
+
Arg
CCT
-
¡û
>A171005139
CP009514
Euryarchaeota
Methanosarcina mazei C16 [CP009514]
351073
351148
+
Arg
CCT
-
¡û
>A171005220
CP009515
Euryarchaeota
Methanosarcina lacustris Z-7289 [CP009515]
3658363
3658288
-
Arg
CCT
-
¡û
>A171005243
CP009516
Euryarchaeota
Methanosarcina horonobensis HB-1 = JCM 15518 [CP009516]
444072
444147
+
Arg
CCT
-
¡û
>WENV180345651
OBLN01001802
[OBLN] sediment metagenome; sediment
1037
1112
+
Arg
CCT
[ENA]
¢þ
>At1428
AE010299
Euryarchaeota
Methanosarcina acetivorans C2A [AE010299]
5346094
5346020
-
Arg
CCT
[Ensembl]
¡û
>At1533
AE008384
Euryarchaeota
Methanosarcina mazei Go1 [AE008384]
1212815
1212741
-
Arg
CCT
[Ensembl]
¡û
>WENV170727201
LSQX01408421
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
4049
4126
+
Arg
CCT
[ENA]
¢þ
>WENV170784195
MCHG01000107
[MCHG] permafrost metagenome; enrichment culture inoculated with soil; incubated with H2/CO2 at 20 degrees celsius and
34089
34012
-
Arg
CCT
[ENA]
¢þ
>W1910569243
JJOR01000084
Euryarchaeota
Methanosarcina mazei 2.F.A.2.3 [JJOR]
60167
60092
-
Arg
CCT
[ENA]
¡û
>W1910569318
JJOS01000115
Euryarchaeota
Methanosarcina mazei 2.F.A.2.4 [JJOS]
19917
19842
-
Arg
CCT
[ENA]
¡û
>W1910569370
JJOT01000100
Euryarchaeota
Methanosarcina mazei 2.F.T.0.2 [JJOT]
5301
5376
+
Arg
CCT
[ENA]
¡û
>W1910569409
JJOU01000149
Euryarchaeota
Methanosarcina mazei 2.F.T.2.6 [JJOU]
3737
3812
+
Arg
CCT
[ENA]
¡û
>W1910569469
JJOV01000084
Euryarchaeota
Methanosarcina sp. 2.H.A.1B.4 [JJOV]
5019
4944
-
Arg
CCT
[ENA]
¡û
>W1910569495
JJOW01000131
Euryarchaeota
Methanosarcina sp. 2.H.T.1A.15 [JJOW]
17159
17234
+
Arg
CCT
[ENA]
¡û
>W1910569533
JJOX01000022
Euryarchaeota
Methanosarcina sp. 2.H.T.1A.3 [JJOX]
143697
143772
+
Arg
CCT
[ENA]
¡û
>W1910569615
JJOY01000048
Euryarchaeota
Methanosarcina sp. 2.H.T.1A.6 [JJOY]
142032
142107
+
Arg
CCT
[ENA]
¡û
>W1910569663
JJOZ01000050
Euryarchaeota
Methanosarcina sp. 2.H.T.1A.8 [JJOZ]
142070
142145
+
Arg
CCT
[ENA]
¡û
>W1910569716
JJPA01000192
Euryarchaeota
Methanosarcina mazei 3.F.A.1A.1 [JJPA]
58689
58614
-
Arg
CCT
[ENA]
¡û
>W1910569739
JJPB01000018
Euryarchaeota
Methanosarcina mazei 3.F.A.1A.3 [JJPB]
3810
3885
+
Arg
CCT
[ENA]
¡û
>W1910569805
JJPC01000046
Euryarchaeota
Methanosarcina mazei 3.F.A.1B.1 [JJPC]
5231
5306
+
Arg
CCT
[ENA]
¡û
>W1910569875
JJPD01000171
Euryarchaeota
Methanosarcina mazei 3.F.A.2.12 [JJPD]
93639
93714
+
Arg
CCT
[ENA]
¡û
>W1910569895
JJPE01000009
Euryarchaeota
Methanosarcina mazei 3.F.A.2.3 [JJPE]
3737
3812
+
Arg
CCT
[ENA]
¡û
>W1910569959
JJPF01000046
Euryarchaeota
Methanosarcina mazei 3.F.A.2.5 [JJPF]
3738
3813
+
Arg
CCT
[ENA]
¡û
>W1910569994
JJPG01000007
Euryarchaeota
Methanosarcina mazei 3.F.A.2.6 [JJPG]
3737
3812
+
Arg
CCT
[ENA]
¡û
>W1910570079
JJPH01000110
Euryarchaeota
Methanosarcina mazei 3.F.A.2.7 [JJPH]
59297
59222
-
Arg
CCT
[ENA]
¡û
>W1910570137
JJPI01000141
Euryarchaeota
Methanosarcina mazei 3.F.T.1A.1 [JJPI]
6006
6081
+
Arg
CCT
[ENA]
¡û
>W1910570184
JJPJ01000125
Euryarchaeota
Methanosarcina mazei 3.F.T.1A.2 [JJPJ]
77031
76956
-
Arg
CCT
[ENA]
¡û
>W1910570204
JJPK01000014
Euryarchaeota
Methanosarcina mazei 3.F.T.1A.4 [JJPK]
165369
165294
-
Arg
CCT
[ENA]
¡û
>W1910570258
JJPL01000060
Euryarchaeota
Methanosarcina mazei 3.F.T.2.1 [JJPL]
66105
66030
-
Arg
CCT
[ENA]
¡û
>W1910570316
JJPM01000159
Euryarchaeota
Methanosarcina mazei 3.H.A.1A.1 [JJPM]
3737
3812
+
Arg
CCT
[ENA]
¡û
>W1910570348
JJPN01000005
Euryarchaeota
Methanosarcina mazei 3.H.A.1A.2 [JJPN]
5233
5308
+
Arg
CCT
[ENA]
¡û
>W1910570410
JJPO01000017
Euryarchaeota
Methanosarcina mazei 3.H.A.2.1 [JJPO]
60842
60767
-
Arg
CCT
[ENA]
¡û
>W1910570447
JJPP01000011
Euryarchaeota
Methanosarcina mazei 3.H.A.2.4 [JJPP]
77044
76969
-
Arg
CCT
[ENA]
¡û
>W1910570542
JJPQ01000175
Euryarchaeota
Methanosarcina mazei 3.H.A.2.5 [JJPQ]
9717
9792
+
Arg
CCT
[ENA]
¡û
>W1910570569
JJPR01000079
Euryarchaeota
Methanosarcina mazei 3.H.A.2.6 [JJPR]
5324
5399
+
Arg
CCT
[ENA]
¡û
>W1910570601
JJPS01000009
Euryarchaeota
Methanosarcina mazei 3.H.A.2.8 [JJPS]
5096
5171
+
Arg
CCT
[ENA]
¡û
>W1910570672
JJPT01000081
Euryarchaeota
Methanosarcina mazei 3.H.M.1A.1 [JJPT]
3737
3812
+
Arg
CCT
[ENA]
¡û
>W1910570793
JJPV01000127
Euryarchaeota
Methanosarcina mazei 3.H.M.1B.2 [JJPV]
3737
3812
+
Arg
CCT
[ENA]
¡û
>W1910570837
JJPW01000069
Euryarchaeota
Methanosarcina mazei 3.H.M.1B.5 [JJPW]
3737
3812
+
Arg
CCT
[ENA]
¡û
>W1910570884
JJPX01000114
Euryarchaeota
Methanosarcina mazei 3.H.M.2.7 [JJPX]
55674
55599
-
Arg
CCT
[ENA]
¡û
>W1910570932
JJPY01000068
Euryarchaeota
Methanosarcina mazei 3.H.T.1A.1 [JJPY]
64624
64549
-
Arg
CCT
[ENA]
¡û
>W1910570977
JJPZ01000075
Euryarchaeota
Methanosarcina mazei 3.H.T.1A.2 [JJPZ]
3737
3812
+
Arg
CCT
[ENA]
¡û
>W1910571008
JJQA01000017
Euryarchaeota
Methanosarcina mazei 1.F.A.1A.3 [JJQA]
3749
3824
+
Arg
CCT
[ENA]
¡û
>W1910571073
JJQB01000052
Euryarchaeota
Methanosarcina mazei 1.F.A.1B.3 [JJQB]
174709
174634
-
Arg
CCT
[ENA]
¡û
>W1910571109
JJQC01000029
Euryarchaeota
Methanosarcina mazei 1.F.A.1B.4 [JJQC]
108258
108333
+
Arg
CCT
[ENA]
¡û
>W1910571150
JJQD01000001
Euryarchaeota
Methanosarcina mazei 1.F.A.2.8 [JJQD]
5232
5307
+
Arg
CCT
[ENA]
¡û
>W1910571210
JJQE01000043
Euryarchaeota
Methanosarcina mazei 1.F.M.0.5 [JJQE]
3749
3824
+
Arg
CCT
[ENA]
¡û
>W1910571308
JJQG01000038
Euryarchaeota
Methanosarcina mazei 1.H.A.1A.1 [JJQG]
77611
77536
-
Arg
CCT
[ENA]
¡û
>W1910571359
JJQH01000021
Euryarchaeota
Methanosarcina mazei 1.H.A.1A.3 [JJQH]
5230
5305
+
Arg
CCT
[ENA]
¡û
>W1910571416
JJQI01000026
Euryarchaeota
Methanosarcina mazei 1.H.A.1A.4 [JJQI]
45952
46027
+
Arg
CCT
[ENA]
¡û
>W1910571506
JJQJ01000222
Euryarchaeota
Methanosarcina mazei 1.H.A.1A.6 [JJQJ]
600
675
+
Arg
CCT
[ENA]
¡û
>W1910571519
JJQK01000047
Euryarchaeota
Methanosarcina mazei 1.H.A.2.1 [JJQK]
3737
3812
+
Arg
CCT
[ENA]
¡û
>W1910571570
JJQL01000007
Euryarchaeota
Methanosarcina sp. 1.H.A.2.2 [JJQL]
128735
128660
-
Arg
CCT
[ENA]
¡û
>W1910571630
JJQM01000057
Euryarchaeota
Methanosarcina mazei 1.H.A.2.3 [JJQM]
82250
82175
-
Arg
CCT
[ENA]
¡û
>W1910571693
JJQN01000055
Euryarchaeota
Methanosarcina mazei 1.H.A.2.6 [JJQN]
9644
9719
+
Arg
CCT
[ENA]
¡û
>W1910571776
JJQO01000304
Euryarchaeota
Methanosarcina mazei 1.H.A.2.7 [JJQO]
77431
77356
-
Arg
CCT
[ENA]
¡û
>W1910571808
JJQP01000082
Euryarchaeota
Methanosarcina mazei 1.H.A.2.8 [JJQP]
59806
59731
-
Arg
CCT
[ENA]
¡û
>W1910571852
JJQQ01000006
Euryarchaeota
Methanosarcina mazei 1.H.M.0.1 [JJQQ]
4655
4730
+
Arg
CCT
[ENA]
¡û
>W1910571926
JJQR01000079
Euryarchaeota
Methanosarcina mazei 1.H.M.1A.1 [JJQR]
65804
65729
-
Arg
CCT
[ENA]
¡û
>W1910571974
JJQS01000060
Euryarchaeota
Methanosarcina mazei 1.H.M.1A.2 [JJQS]
5230
5305
+
Arg
CCT
[ENA]
¡û
>W1910572038
JJQT01000210
Euryarchaeota
Methanosarcina mazei 1.H.M.1A.3 [JJQT]
5125
5200
+
Arg
CCT
[ENA]
¡û
>W1910572107
JJQV01000017
Euryarchaeota
Methanosarcina mazei 1.H.M.2.2 [JJQV]
5230
5305
+
Arg
CCT
[ENA]
¡û
>W1910572166
JJQW01000031
Euryarchaeota
Methanosarcina mazei 1.H.M.2.3 [JJQW]
5128
5203
+
Arg
CCT
[ENA]
¡û
>W1910572229
JJQX01000159
Euryarchaeota
Methanosarcina mazei 1.H.M.2.4 [JJQX]
5230
5305
+
Arg
CCT
[ENA]
¡û
>W1910572250
JJQY01000012
Euryarchaeota
Methanosarcina sp. 1.H.T.1A.1 [JJQY]
53440
53365
-
Arg
CCT
[ENA]
¡û
>W1910572324
JJQZ01000108
Euryarchaeota
Methanosarcina mazei 1.H.T.2.1 [JJQZ]
5154
5229
+
Arg
CCT
[ENA]
¡û
>W1910572359
JJRA01000042
Euryarchaeota
Methanosarcina mazei 1.H.T.2.3 [JJRA]
5231
5306
+
Arg
CCT
[ENA]
¡û
>W1910572429
JJRB01000113
Euryarchaeota
Methanosarcina mazei 1.H.T.2.5 [JJRB]
5231
5306
+
Arg
CCT
[ENA]
¡û
>W1910575079
JQLR01000001
Euryarchaeota
Methanosarcina soligelidi SMA-21 [JQLR]
542693
542618
-
Arg
CCT
[ENA]
¡û
>W1910694781
MDTP02000059
Euryarchaeota
Methanosarcina sp. Ant1 [MDTP]
30720
30645
-
Arg
CCT
[ENA]
¡û
>W1610670275
LKAZ01000057
Euryarchaeota
Methanosarcina flavescens E03.2 [LKAZ]
232709
232786
+
Arg
CCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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