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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.161078 (31 seq.)
>W1711317516
MAXI01000246
Thermodesulfobacteriota
Desulfovibrio sp. S3730MH75 [MAXI]
34853
34929
+
Arg
ACG
[ENA]
¡û
>W1711510608
MLBG01000004
Thermodesulfobacteriota
Desulfovibrio sp. DV [MLBG]
98882
98806
-
Arg
ACG
[ENA]
¡û
>W131224558
AUCX01000004
Thermodesulfobacteriota
Maridesulfovibrio bastinii DSM 16055 [AUCX]
52858
52934
+
Arg
ACG
[ENA]
¡û
>W131224808
AUDB01000004
Thermodesulfobacteriota
Maridesulfovibrio hydrothermalis AM13 = DSM 14728 [AUDB]
128347
128271
-
Arg
ACG
[ENA]
¡û
>W131224809
AUDB01000004
Thermodesulfobacteriota
Maridesulfovibrio hydrothermalis AM13 = DSM 14728 [AUDB]
128139
128063
-
Arg
ACG
[ENA]
¡û
>W131224885
AUDC01000014
Thermodesulfobacteriota
Maridesulfovibrio zosterae DSM 11974 [AUDC]
212931
212855
-
Arg
ACG
[ENA]
¡û
>W131224886
AUDC01000014
Thermodesulfobacteriota
Maridesulfovibrio zosterae DSM 11974 [AUDC]
209573
209497
-
Arg
ACG
[ENA]
¡û
>WENV180043257
LQAH01016867
[LQAH] bioreactor metagenome; bioreactor_4 inoculated with Wadden Sea sediment; 2nd replicate of a sulfate-reducing system that
11
87
+
Arg
ACG
[ENA]
¢þ
>WENV181225636
OFDI01020463
[OFDI] metagenome; hydrothermal vent
402
478
+
Arg
ACG
[ENA]
¢þ
>W141279179
JAGC01000009
Thermodesulfobacteriota
Solidesulfovibrio magneticus magneticus IFRC170 [JAGC]
1921482
1921558
+
Arg
ACG
[ENA]
¡û
>WENV183747377
PPCM01001248
[PPCM] marine sediment metagenome; marine sediment
4023
3947
-
Arg
ACG
[ENA]
¢þ
>WENV183747378
PPCM01001248
[PPCM] marine sediment metagenome; marine sediment
3700
3624
-
Arg
ACG
[ENA]
¢þ
>WENV183747625
PPCM01010241
[PPCM] marine sediment metagenome; marine sediment
1478
1402
-
Arg
ACG
[ENA]
¢þ
>WENV170645338
JMSV01000462
[JMSV] bioreactor metagenome; Culture-2 Bioreactor Bmz derived from microbial biomass from the upper 2 cm of a marine
3520
3444
-
Arg
ACG
[ENA]
¢þ
>WENV170645339
JMSV01000462
[JMSV] bioreactor metagenome; Culture-2 Bioreactor Bmz derived from microbial biomass from the upper 2 cm of a marine
3253
3177
-
Arg
ACG
[ENA]
¢þ
>WENV170699567
LGVF01587013
[LGVF] marine sediment metagenome; combined push core samples #3730, #5133, and #5579 collected at Hydrate Ridge
884
808
-
Arg
ACG
[ENA]
¢þ
>WENV170715167
LNQE01000124
[LNQE] hydrocarbon metagenome; hydrocarbon-contaminated ditch
24316
24240
-
Arg
ACG
[ENA]
¢þ
>W09118018
ACCN01000008
Thermodesulfobacteriota
Maridesulfovibrio salexigens DSM 2638 [ACCN]
155256
155180
-
Arg
ACG
[ENA]
¡û
>W09118019
ACCN01000008
Thermodesulfobacteriota
Maridesulfovibrio salexigens DSM 2638 [ACCN]
154983
154907
-
Arg
ACG
[ENA]
¡û
>W141778995
JONL01000002
Thermodesulfobacteriota
Maridesulfovibrio frigidus DSM 17176 [JONL]
127652
127728
+
Arg
ACG
[ENA]
¡û
>C09104271
CP001649
Thermodesulfobacteriota
Maridesulfovibrio salexigens DSM 2638 [CP001649]
790049
789973
-
Arg
ACG
[Ensembl]
¡û
>C09104272
CP001649
Thermodesulfobacteriota
Maridesulfovibrio salexigens DSM 2638 [CP001649]
789776
789700
-
Arg
ACG
[Ensembl]
¡û
>C141011894
FO203519
Thermodesulfobacteriota
Maridesulfovibrio hydrothermalis [FO203519]
485201
485277
+
Arg
ACG
-
¡û
>C141011895
FO203519
Thermodesulfobacteriota
Maridesulfovibrio hydrothermalis [FO203519]
485409
485485
+
Arg
ACG
-
¡û
>W1511365629
JSEH01000007
Thermodesulfobacteriota
Desulfovibrio sp. TomC [JSEH]
68294
68370
+
Arg
ACG
[ENA]
¡û
>W1610046063
BBCB01000048
Thermodesulfobacteriota
Salidesulfovibrio brasiliensis JCM 12178 [BBCB]
2938
3014
+
Arg
ACG
[ENA]
¡û
>C131018076
FO203522
Thermodesulfobacteriota
Maridesulfovibrio hydrothermalis AM13 = DSM 14728 [FO203522]
485201
485277
+
Arg
ACG
[Ensembl]
¡û
>C131018077
FO203522
Thermodesulfobacteriota
Maridesulfovibrio hydrothermalis AM13 = DSM 14728 [FO203522]
485409
485485
+
Arg
ACG
[Ensembl]
¡û
>W1710042859
BBCB01000048
Thermodesulfobacteriota
Salidesulfovibrio brasiliensis JCM 12178 [BBCB]
2938
3014
+
Arg
ACG
[ENA]
¡û
>W1710520959
FNGA01000002
Thermodesulfobacteriota
Maridesulfovibrio ferrireducens [FNGA]
970669
970745
+
Arg
ACG
[ENA]
¡û
>W1710607135
FWZU01000002
Thermodesulfobacteriota
Desulfovibrio gilichinskyi K3S [FWZU]
121053
120977
-
Arg
ACG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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