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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.161079 (24 seq.)
>W1711317503
MAXI01000117
Thermodesulfobacteriota
Desulfovibrio sp. S3730MH75 [MAXI]
19739
19663
-
Trp
CCA
[ENA]
¡û
>W131224765
AUDB01000001
Thermodesulfobacteriota
Maridesulfovibrio hydrothermalis AM13 = DSM 14728 [AUDB]
282011
282087
+
Trp
CCA
[ENA]
¡û
>W131224795
AUDB01000003
Thermodesulfobacteriota
Maridesulfovibrio hydrothermalis AM13 = DSM 14728 [AUDB]
368538
368462
-
Trp
CCA
[ENA]
¡û
>W131224870
AUDC01000012
Thermodesulfobacteriota
Maridesulfovibrio zosterae DSM 11974 [AUDC]
212400
212476
+
Trp
CCA
[ENA]
¡û
>W131224881
AUDC01000012
Thermodesulfobacteriota
Maridesulfovibrio zosterae DSM 11974 [AUDC]
145695
145619
-
Trp
CCA
[ENA]
¡û
>WENV183747152
PPCM01000304
[PPCM] marine sediment metagenome; marine sediment
56318
56242
-
Trp
CCA
[ENA]
¢þ
>WENV183747517
PPCM01003725
[PPCM] marine sediment metagenome; marine sediment
592
668
+
Trp
CCA
[ENA]
¢þ
>WENV183747548
PPCM01004741
[PPCM] marine sediment metagenome; marine sediment
1413
1489
+
Trp
CCA
[ENA]
¢þ
>WENV183747579
PPCM01006331
[PPCM] marine sediment metagenome; marine sediment
1848
1772
-
Trp
CCA
[ENA]
¢þ
>WENV170645348
JMSV01000521
[JMSV] bioreactor metagenome; Culture-2 Bioreactor Bmz derived from microbial biomass from the upper 2 cm of a marine
2256
2180
-
Trp
CCA
[ENA]
¢þ
>WENV170645374
JMSV01001090
[JMSV] bioreactor metagenome; Culture-2 Bioreactor Bmz derived from microbial biomass from the upper 2 cm of a marine
683
607
-
Trp
CCA
[ENA]
¢þ
>WENV170699593
LGVF01592911
[LGVF] marine sediment metagenome; combined push core samples #3730, #5133, and #5579 collected at Hydrate Ridge
212
288
+
Trp
CCA
[ENA]
¢þ
>W09117961
ACCN01000001
Thermodesulfobacteriota
Maridesulfovibrio salexigens DSM 2638 [ACCN]
49322
49398
+
Trp
CCA
[ENA]
¡û
>W09117966
ACCN01000001
Thermodesulfobacteriota
Maridesulfovibrio salexigens DSM 2638 [ACCN]
121076
121152
+
Trp
CCA
[ENA]
¡û
>W141778991
JONL01000001
Thermodesulfobacteriota
Maridesulfovibrio frigidus DSM 17176 [JONL]
477773
477697
-
Trp
CCA
[ENA]
¡û
>C141011931
FO203519
Thermodesulfobacteriota
Maridesulfovibrio hydrothermalis [FO203519]
3426844
3426768
-
Trp
CCA
-
¡û
>C141011947
FO203519
Thermodesulfobacteriota
Maridesulfovibrio hydrothermalis [FO203519]
2062176
2062100
-
Trp
CCA
-
¡û
>C09104194
CP001649
Thermodesulfobacteriota
Maridesulfovibrio salexigens DSM 2638 [CP001649]
1232714
1232790
+
Trp
CCA
[Ensembl]
¡û
>C09104199
CP001649
Thermodesulfobacteriota
Maridesulfovibrio salexigens DSM 2638 [CP001649]
1304470
1304546
+
Trp
CCA
[Ensembl]
¡û
>C131018113
FO203522
Thermodesulfobacteriota
Maridesulfovibrio hydrothermalis AM13 = DSM 14728 [FO203522]
3426844
3426768
-
Trp
CCA
[Ensembl]
¡û
>C131018129
FO203522
Thermodesulfobacteriota
Maridesulfovibrio hydrothermalis AM13 = DSM 14728 [FO203522]
2062176
2062100
-
Trp
CCA
[Ensembl]
¡û
>W1710520965
FNGA01000002
Thermodesulfobacteriota
Maridesulfovibrio ferrireducens [FNGA]
494181
494105
-
Trp
CCA
[ENA]
¡û
>W1710607129
FWZU01000002
Thermodesulfobacteriota
Desulfovibrio gilichinskyi K3S [FWZU]
630259
630335
+
Trp
CCA
[ENA]
¡û
>W1710607130
FWZU01000002
Thermodesulfobacteriota
Desulfovibrio gilichinskyi K3S [FWZU]
562312
562236
-
Trp
CCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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