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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.161086 (95 seq.)
>W131224817
AUDB01000010
Thermodesulfobacteriota
Maridesulfovibrio hydrothermalis AM13 = DSM 14728 [AUDB]
142695
142771
+
Met
CAT
[ENA]
¡û
>W131224818
AUDB01000010
Thermodesulfobacteriota
Maridesulfovibrio hydrothermalis AM13 = DSM 14728 [AUDB]
142929
143005
+
Met
CAT
[ENA]
¡û
>W1711411785
MGTN01000140
Thermodesulfobacteriota
Desulfovibrionales bacterium GWA2_65_9 [MGTN]
25983
26059
+
Met
CAT
[ENA]
¡û
>W1711510619
MLBG01000029
Thermodesulfobacteriota
Desulfovibrio sp. DV [MLBG]
26295
26371
+
Met
CAT
[ENA]
¡û
>W131182301
ARQF01000021
Thermodesulfobacteriota
Halodesulfovibrio aestuarii subsp. aestuarii DSM 17919 = ATCC 29578 [ARQF]
515462
515386
-
Met
CAT
[ENA]
¡û
>W131182302
ARQF01000021
Thermodesulfobacteriota
Halodesulfovibrio aestuarii subsp. aestuarii DSM 17919 = ATCC 29578 [ARQF]
515362
515286
-
Met
CAT
[ENA]
¡û
>W131182309
ARQF01000021
Thermodesulfobacteriota
Halodesulfovibrio aestuarii subsp. aestuarii DSM 17919 = ATCC 29578 [ARQF]
342052
341976
-
Met
CAT
[ENA]
¡û
>W131221686
AUAR01000001
Thermodesulfobacteriota
Desulfomicrobium escambiense DSM 10707 [AUAR]
54508
54432
-
Met
CAT
[ENA]
¡û
>W131222849
AUBP01000008
Thermodesulfobacteriota
Desulfovibrio inopinatus DSM 10711 [AUBP]
219063
219139
+
Met
CAT
[ENA]
¡û
>W131222905
AUBQ01000012
Thermodesulfobacteriota
Fundidesulfovibrio putealis DSM 16056 [AUBQ]
103807
103883
+
Met
CAT
[ENA]
¡û
>W131224579
AUCX01000014
Thermodesulfobacteriota
Maridesulfovibrio bastinii DSM 16055 [AUCX]
25558
25634
+
Met
CAT
[ENA]
¡û
>W131224844
AUDC01000009
Thermodesulfobacteriota
Maridesulfovibrio zosterae DSM 11974 [AUDC]
102161
102237
+
Met
CAT
[ENA]
¡û
>W131224845
AUDC01000009
Thermodesulfobacteriota
Maridesulfovibrio zosterae DSM 11974 [AUDC]
102399
102475
+
Met
CAT
[ENA]
¡û
>W131235944
AULY01000006
Thermodesulfobacteriota
Halodesulfovibrio aestuarii DSM 10141 [AULY]
258923
258999
+
Met
CAT
[ENA]
¡û
>W131235945
AULY01000006
Thermodesulfobacteriota
Halodesulfovibrio aestuarii DSM 10141 [AULY]
259023
259099
+
Met
CAT
[ENA]
¡û
>W131235951
AULY01000006
Thermodesulfobacteriota
Halodesulfovibrio aestuarii DSM 10141 [AULY]
438746
438822
+
Met
CAT
[ENA]
¡û
>W131235952
AULY01000006
Thermodesulfobacteriota
Halodesulfovibrio aestuarii DSM 10141 [AULY]
438846
438922
+
Met
CAT
[ENA]
¡û
>C007561
CP000112
Thermodesulfobacteriota
Oleidesulfovibrio alaskensis G20 [CP000112]
1997294
1997218
-
Met
CAT
[Ensembl]
¡û
>C007562
CP000112
Thermodesulfobacteriota
Oleidesulfovibrio alaskensis G20 [CP000112]
1997078
1997002
-
Met
CAT
[Ensembl]
¡û
>C008062
CP000527
Thermodesulfobacteriota
Nitratidesulfovibrio vulgaris DP4 [CP000527]
1728025
1728101
+
Met
CAT
[Ensembl]
¡û
>C008163
AE017285
Thermodesulfobacteriota
Nitratidesulfovibrio vulgaris str. Hildenborough [AE017285]
1740229
1740153
-
Met
CAT
[Ensembl]
¡û
>WENV180043337
LQAH01031901
[LQAH] bioreactor metagenome; bioreactor_4 inoculated with Wadden Sea sediment; 2nd replicate of a sulfate-reducing system that
336
412
+
Met
CAT
[ENA]
¢þ
>W141027972
ALAO01000037
Thermodesulfobacteriota
Solidesulfovibrio magneticus str. Maddingley MBC34 [ALAO]
4494
4418
-
Met
CAT
[ENA]
¡û
>WENV180317356
OBKJ01127527
[OBKJ] metagenome; hydrothermal vent
176
100
-
Met
CAT
[ENA]
¢þ
>WENV181188920
OEOE01480293
[OEOE] activated sludge metagenome; Activated Sludge
113
37
-
Met
CAT
[ENA]
¢þ
>WENV181208712
OFBC01002244
[OFBC] metagenome; hydrothermal vent
1687
1611
-
Met
CAT
[ENA]
¢þ
>W141169802
AXWQ01000015
Thermodesulfobacteriota
Oleidesulfovibrio alaskensis DSM 16109 [AXWQ]
824
900
+
Met
CAT
[ENA]
¡û
>W141169803
AXWQ01000015
Thermodesulfobacteriota
Oleidesulfovibrio alaskensis DSM 16109 [AXWQ]
1040
1116
+
Met
CAT
[ENA]
¡û
>W141279182
JAGC01000009
Thermodesulfobacteriota
Solidesulfovibrio magneticus magneticus IFRC170 [JAGC]
1312802
1312726
-
Met
CAT
[ENA]
¡û
>WENV183747387
PPCM01001481
[PPCM] marine sediment metagenome; marine sediment
10489
10413
-
Met
CAT
[ENA]
¢þ
>WENV183747388
PPCM01001481
[PPCM] marine sediment metagenome; marine sediment
10244
10168
-
Met
CAT
[ENA]
¢þ
>WENV183747461
PPCM01002578
[PPCM] marine sediment metagenome; marine sediment
297
221
-
Met
CAT
[ENA]
¢þ
>WENV170004455
AGTN01684682
[AGTN] bioreactor metagenome; poplar biomass
202
278
+
Met
CAT
[ENA]
¢þ
>WENV170645384
JMSV01001995
[JMSV] bioreactor metagenome; Culture-2 Bioreactor Bmz derived from microbial biomass from the upper 2 cm of a marine
280
204
-
Met
CAT
[ENA]
¢þ
>WENV170657589
JTFP01003805
[JTFP] activated sludge metagenome; sludge from laboratory unaugmented bioreactor treating industrial wastewater
2365
2441
+
Met
CAT
[ENA]
¢þ
>WENV170658090
JTFP01054050
[JTFP] activated sludge metagenome; sludge from laboratory unaugmented bioreactor treating industrial wastewater
882
806
-
Met
CAT
[ENA]
¢þ
>WENV170658411
JTFP01106838
[JTFP] activated sludge metagenome; sludge from laboratory unaugmented bioreactor treating industrial wastewater
473
397
-
Met
CAT
[ENA]
¢þ
>WENV170715187
LNQE01000287
[LNQE] hydrocarbon metagenome; hydrocarbon-contaminated ditch
6743
6667
-
Met
CAT
[ENA]
¢þ
>C191045056
CP026538
Thermodesulfobacteriota
Solidesulfovibrio carbinolicus DSM 3852 [CP026538]
2625340
2625416
+
Met
CAT
-
¡û
>W141731337
JNJA01000003
Thermodesulfobacteriota
Solidesulfovibrio alcoholivorans DSM 5433 [JNJA]
215304
215380
+
Met
CAT
[ENA]
¡û
>W141731340
JNJA01000003
Thermodesulfobacteriota
Solidesulfovibrio alcoholivorans DSM 5433 [JNJA]
454017
453941
-
Met
CAT
[ENA]
¡û
>W141776896
JOMJ01000003
Thermodesulfobacteriota
Desulfohalovibrio reitneri L21-Syr-AB [JOMJ]
1025276
1025200
-
Met
CAT
[ENA]
¡û
>W141779023
JONL01000007
Thermodesulfobacteriota
Maridesulfovibrio frigidus DSM 17176 [JONL]
38696
38620
-
Met
CAT
[ENA]
¡û
>W09100697
AABN02000009
Thermodesulfobacteriota
Oleidesulfovibrio alaskensis G20 [AABN]
112381
112457
+
Met
CAT
[ENA]
¡û
>W09100698
AABN02000009
Thermodesulfobacteriota
Oleidesulfovibrio alaskensis G20 [AABN]
112597
112673
+
Met
CAT
[ENA]
¡û
>W09106206
AATW01000001
Thermodesulfobacteriota
Nitratidesulfovibrio vulgaris subsp. vulgaris DP4 [AATW]
248262
248338
+
Met
CAT
[ENA]
¡û
>W09108769
ABTP01000001
Thermodesulfobacteriota
Desulfomicrobium baculatum DSM 4028 [ABTP]
118413
118489
+
Met
CAT
[ENA]
¡û
>W09118016
ACCN01000007
Thermodesulfobacteriota
Maridesulfovibrio salexigens DSM 2638 [ACCN]
58078
58002
-
Met
CAT
[ENA]
¡û
>W09118017
ACCN01000007
Thermodesulfobacteriota
Maridesulfovibrio salexigens DSM 2638 [ACCN]
57832
57756
-
Met
CAT
[ENA]
¡û
>W09134049
ACQX01000001
Thermodesulfobacteriota
Nitratidesulfovibrio vulgaris RCH1 [ACQX]
346008
346084
+
Met
CAT
[ENA]
¡û
>W1910182264
BJMT01000003
Thermodesulfobacteriota
Desulfovibrio desulfuricans NBRC 13699 [BJMT]
171129
171053
-
Met
CAT
[ENA]
¡û
>C141011916
FO203519
Thermodesulfobacteriota
Maridesulfovibrio hydrothermalis [FO203519]
2785999
2786075
+
Met
CAT
-
¡û
>C141011917
FO203519
Thermodesulfobacteriota
Maridesulfovibrio hydrothermalis [FO203519]
2786233
2786309
+
Met
CAT
-
¡û
>W1910547832
FZOC01000002
Thermodesulfobacteriota
Humidesulfovibrio mexicanus DSM 13116 [FZOC]
597912
597836
-
Met
CAT
[ENA]
¡û
>C09104099
AP010904
Thermodesulfobacteriota
Solidesulfovibrio magneticus RS-1 [AP010904]
2689849
2689925
+
Met
CAT
[Ensembl]
¡û
>C09104265
CP001649
Thermodesulfobacteriota
Maridesulfovibrio salexigens DSM 2638 [CP001649]
2071667
2071591
-
Met
CAT
[Ensembl]
¡û
>C09104266
CP001649
Thermodesulfobacteriota
Maridesulfovibrio salexigens DSM 2638 [CP001649]
2071421
2071345
-
Met
CAT
[Ensembl]
¡û
>W10112675
ADFE01000047
Thermodesulfobacteriota
Solidesulfovibrio carbinoliphilus FW1012B [ADFE]
5364
5440
+
Met
CAT
[ENA]
¡û
>W10126137
AECZ01000019
Thermodesulfobacteriota
Solidesulfovibrio fructosivorans JJ [AECZ]
70040
70116
+
Met
CAT
[ENA]
¡û
>C10104954
CP001629
Thermodesulfobacteriota
Desulfomicrobium baculatum DSM 4028 [CP001629]
2271059
2271135
+
Met
CAT
[Ensembl]
¡û
>C11107430
CP002297
Thermodesulfobacteriota
Nitratidesulfovibrio vulgaris RCH1 [CP002297]
1842989
1843065
+
Met
CAT
[Ensembl]
¡û
>W11115862
ADFE02000001
Thermodesulfobacteriota
Solidesulfovibrio carbinoliphilus FW1012B [ADFE]
1003884
1003960
+
Met
CAT
[ENA]
¡û
>W1511365614
JSEH01000001
Thermodesulfobacteriota
Desulfovibrio sp. TomC [JSEH]
168163
168239
+
Met
CAT
[ENA]
¡û
>W11133398
AECZ01000019
Thermodesulfobacteriota
Solidesulfovibrio fructosivorans JJ [AECZ]
70040
70116
+
Met
CAT
[ENA]
¡û
>W121036477
AHMC01000019
Thermodesulfobacteriota
Desulfovibrio sp. U5L [AHMC]
5282
5358
+
Met
CAT
[ENA]
¡û
>W1610045353
BBBM01000004
Thermodesulfobacteriota
Desulfothermus okinawensis JCM 13304 [BBBM]
97924
97997
+
Met
CAT
[ENA]
¡û
>C131018098
FO203522
Thermodesulfobacteriota
Maridesulfovibrio hydrothermalis AM13 = DSM 14728 [FO203522]
2785999
2786075
+
Met
CAT
[Ensembl]
¡û
>C131018099
FO203522
Thermodesulfobacteriota
Maridesulfovibrio hydrothermalis AM13 = DSM 14728 [FO203522]
2786233
2786309
+
Met
CAT
[Ensembl]
¡û
>W1610550406
JXMS01000001
Thermodesulfobacteriota
Halodesulfovibrio spirochaetisodalis [JXMS]
168489
168413
-
Met
CAT
[ENA]
¡û
>W1610550418
JXMS01000004
Thermodesulfobacteriota
Halodesulfovibrio spirochaetisodalis [JXMS]
125549
125625
+
Met
CAT
[ENA]
¡û
>W1610550419
JXMS01000004
Thermodesulfobacteriota
Halodesulfovibrio spirochaetisodalis [JXMS]
125662
125738
+
Met
CAT
[ENA]
¡û
>W1610550420
JXMS01000004
Thermodesulfobacteriota
Halodesulfovibrio spirochaetisodalis [JXMS]
125775
125851
+
Met
CAT
[ENA]
¡û
>W1610550421
JXMS01000004
Thermodesulfobacteriota
Halodesulfovibrio spirochaetisodalis [JXMS]
125888
125964
+
Met
CAT
[ENA]
¡û
>W1610550422
JXMS01000004
Thermodesulfobacteriota
Halodesulfovibrio spirochaetisodalis [JXMS]
126001
126077
+
Met
CAT
[ENA]
¡û
>W1610550423
JXMS01000004
Thermodesulfobacteriota
Halodesulfovibrio spirochaetisodalis [JXMS]
126114
126190
+
Met
CAT
[ENA]
¡û
>W1710042194
BBBM01000004
Thermodesulfobacteriota
Desulfothermus okinawensis JCM 13304 [BBBM]
97924
97997
+
Met
CAT
[ENA]
¡û
>W1710520975
FNGA01000003
Thermodesulfobacteriota
Maridesulfovibrio ferrireducens [FNGA]
668356
668432
+
Met
CAT
[ENA]
¡û
>W1710566348
FORX01000005
Thermodesulfobacteriota
Desulfomicrobium apsheronum [FORX]
146901
146977
+
Met
CAT
[ENA]
¡û
>W1710568379
FOTO01000008
Thermodesulfobacteriota
Desulfomicrobium norvegicum [FOTO]
130341
130417
+
Met
CAT
[ENA]
¡û
>W1710588836
FQZR01000002
Thermodesulfobacteriota
Halodesulfovibrio aestuarii desulfuricans [FQZR]
515179
515103
-
Met
CAT
[ENA]
¡û
>W1710588837
FQZR01000002
Thermodesulfobacteriota
Halodesulfovibrio aestuarii desulfuricans [FQZR]
515079
515003
-
Met
CAT
[ENA]
¡û
>W1710588844
FQZR01000002
Thermodesulfobacteriota
Halodesulfovibrio aestuarii desulfuricans [FQZR]
342287
342211
-
Met
CAT
[ENA]
¡û
>W1710593290
FRDI01000003
Thermodesulfobacteriota
Desulfovibrio litoralis DSM 11393 [FRDI]
397031
397107
+
Met
CAT
[ENA]
¡û
>W1710594442
FSRG01000003
Thermodesulfobacteriota
Halodesulfovibrio marinisediminis DSM 17456 [FSRG]
581905
581829
-
Met
CAT
[ENA]
¡û
>W1710594443
FSRG01000003
Thermodesulfobacteriota
Halodesulfovibrio marinisediminis DSM 17456 [FSRG]
581784
581708
-
Met
CAT
[ENA]
¡û
>W1710594450
FSRG01000003
Thermodesulfobacteriota
Halodesulfovibrio marinisediminis DSM 17456 [FSRG]
334293
334217
-
Met
CAT
[ENA]
¡û
>W1710602296
FUYC01000003
Thermodesulfobacteriota
Paucidesulfovibrio gracilis DSM 16080 [FUYC]
367175
367099
-
Met
CAT
[ENA]
¡û
>W1710607113
FWZU01000001
Thermodesulfobacteriota
Desulfovibrio gilichinskyi K3S [FWZU]
767214
767290
+
Met
CAT
[ENA]
¡û
>W1710660131
JXMS01000001
Thermodesulfobacteriota
Halodesulfovibrio spirochaetisodalis [JXMS]
168489
168413
-
Met
CAT
[ENA]
¡û
>W1710660143
JXMS01000004
Thermodesulfobacteriota
Halodesulfovibrio spirochaetisodalis [JXMS]
125549
125625
+
Met
CAT
[ENA]
¡û
>W1710660144
JXMS01000004
Thermodesulfobacteriota
Halodesulfovibrio spirochaetisodalis [JXMS]
125662
125738
+
Met
CAT
[ENA]
¡û
>W1710660145
JXMS01000004
Thermodesulfobacteriota
Halodesulfovibrio spirochaetisodalis [JXMS]
125775
125851
+
Met
CAT
[ENA]
¡û
>W1710660146
JXMS01000004
Thermodesulfobacteriota
Halodesulfovibrio spirochaetisodalis [JXMS]
125888
125964
+
Met
CAT
[ENA]
¡û
>W1710660147
JXMS01000004
Thermodesulfobacteriota
Halodesulfovibrio spirochaetisodalis [JXMS]
126001
126077
+
Met
CAT
[ENA]
¡û
>W1710660148
JXMS01000004
Thermodesulfobacteriota
Halodesulfovibrio spirochaetisodalis [JXMS]
126114
126190
+
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK