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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.161383 (45 seq.)
>W1711354778
MDFN01000008
Bacteroidota
Arcticibacter eurypsychrophilus [MDFN]
66001
65924
-
Val
TAC
[ENA]
¡û
>W1711354779
MDFN01000008
Bacteroidota
Arcticibacter eurypsychrophilus [MDFN]
44436
44359
-
Val
TAC
[ENA]
¡û
>W1711712767
MTCM01000003
Bacteroidota
Sphingobacterium sp. CZ-UAM [MTCM]
218352
218275
-
Val
TAC
[ENA]
¡û
>W1711712769
MTCM01000003
Bacteroidota
Sphingobacterium sp. CZ-UAM [MTCM]
218178
218101
-
Val
TAC
[ENA]
¡û
>W131156285
AQPN01000145
Bacteroidota
Arcticibacter svalbardensis MN12-7 [AQPN]
127433
127358
-
Val
TAC
[ENA]
¡û
>W131156286
AQPN01000145
Bacteroidota
Arcticibacter svalbardensis MN12-7 [AQPN]
109743
109666
-
Val
TAC
[ENA]
¡û
>WENV183731800
PJTT01000191
[PJTT] soil metagenome; Soil (2) enriched on wood chips
93161
93236
+
Val
TAC
[ENA]
¢þ
>WENV183733014
PJTY01000019
[PJTY] soil metagenome; Soil enriched (2) on filter paper: alkali lignin treatment
233211
233134
-
Val
TAC
[ENA]
¢þ
>WENV183733016
PJTY01000019
[PJTY] soil metagenome; Soil enriched (2) on filter paper: alkali lignin treatment
233037
232962
-
Val
TAC
[ENA]
¢þ
>WENV183736151
PJUC01000053
[PJUC] soil metagenome; Soil enriched on filter paper
37125
37048
-
Val
TAC
[ENA]
¢þ
>WENV183736152
PJUC01000053
[PJUC] soil metagenome; Soil enriched on filter paper
37003
36928
-
Val
TAC
[ENA]
¢þ
>WENV183738631
PJUE01000053
[PJUE] feces metagenome; Chicken feces (3) enriched on wood chips: alkali lignin treatment
9842
9919
+
Val
TAC
[ENA]
¢þ
>WENV183738632
PJUE01000053
[PJUE] feces metagenome; Chicken feces (3) enriched on wood chips: alkali lignin treatment
9934
10009
+
Val
TAC
[ENA]
¢þ
>WENV183738691
PJUE01000108
[PJUE] feces metagenome; Chicken feces (3) enriched on wood chips: alkali lignin treatment
111740
111817
+
Val
TAC
[ENA]
¢þ
>WENV183738877
PJUE01000333
[PJUE] feces metagenome; Chicken feces (3) enriched on wood chips: alkali lignin treatment
110
185
+
Val
TAC
[ENA]
¢þ
>WENV183743256
PJUJ01000259
[PJUJ] feces metagenome; Chicken feces enriched on filter paper: beechwood xylan treatment
17967
17890
-
Val
TAC
[ENA]
¢þ
>WENV183743258
PJUJ01000259
[PJUJ] feces metagenome; Chicken feces enriched on filter paper: beechwood xylan treatment
17792
17717
-
Val
TAC
[ENA]
¢þ
>W09123555
ACHA01000011
Bacteroidota
Sphingobacterium spiritivorum ATCC 33861 [ACHA]
74087
74164
+
Val
TAC
[ENA]
¡û
>C191157507
CP038029
Bacteroidota
Sphingobacterium psychroaquaticum SJ-25 [CP038029]
157060
157135
+
Val
TAC
-
¡û
>C191158017
CP038159
Bacteroidota
Sphingobacterium sp. CZ-2 [CP038159]
312848
312925
+
Val
TAC
-
¡û
>C191158018
CP038159
Bacteroidota
Sphingobacterium sp. CZ-2 [CP038159]
312970
313045
+
Val
TAC
-
¡û
>C191221529
LR590470
Bacteroidota
Sphingobacterium daejeonense NCTC13534 [LR590470]
336535
336610
+
Val
TAC
-
¡û
>W141701939
JMLD01000003
Bacteroidota
Sphingobacterium thalpophilum DSM 11723 [JMLD]
111606
111683
+
Val
TAC
[ENA]
¡û
>W141701941
JMLD01000003
Bacteroidota
Sphingobacterium thalpophilum DSM 11723 [JMLD]
111780
111855
+
Val
TAC
[ENA]
¡û
>W1911136228
NOUX01000006
Bacteroidota
Sphingobacterium cellulitidis R-53603 [NOUX]
248815
248738
-
Val
TAC
[ENA]
¡û
>W1911136263
NOUY01000007
Bacteroidota
Sphingobacterium cellulitidis R-53745 [NOUY]
168528
168451
-
Val
TAC
[ENA]
¡û
>W1810002555
BEYR01000002
Bacteroidota
Sphingobacterium sp. HMA12 [BEYR]
314463
314540
+
Val
TAC
[ENA]
¡û
>W1810002557
BEYR01000002
Bacteroidota
Sphingobacterium sp. HMA12 [BEYR]
314637
314712
+
Val
TAC
[ENA]
¡û
>W1810069034
PEAZ01000059
Bacteroidota
Sphingobacterium sp. 1.A.4 [PEAZ]
7200
7123
-
Val
TAC
[ENA]
¡û
>W1810069035
PEAZ01000059
Bacteroidota
Sphingobacterium sp. 1.A.4 [PEAZ]
7078
7003
-
Val
TAC
[ENA]
¡û
>W1810069108
PEBA01000065
Bacteroidota
Sphingobacterium sp. 1.A.5 [PEBA]
449
374
-
Val
TAC
[ENA]
¡û
>W1810364516
PVTH01000003
Bacteroidota
Arcticibacter pallidicorallinus CGMCC 1.9313 [PVTH]
29469
29392
-
Val
TAC
[ENA]
¡û
>W1810364533
PVTH01000013
Bacteroidota
Arcticibacter pallidicorallinus CGMCC 1.9313 [PVTH]
96660
96585
-
Val
TAC
[ENA]
¡û
>W1511108318
JJMU01000026
Bacteroidota
Sphingobacterium deserti ACCC 05744 [JJMU]
90610
90687
+
Val
TAC
[ENA]
¡û
>C11117925
CP002545
Bacteroidota
Pseudopedobacter saltans DSM 12145 [CP002545]
2968608
2968531
-
Val
TAC
[Ensembl]
¡û
>C11117926
CP002545
Bacteroidota
Pseudopedobacter saltans DSM 12145 [CP002545]
2968513
2968438
-
Val
TAC
[Ensembl]
¡û
>C11121246
CP002584
Bacteroidota
Sphingobacterium sp. 21 [CP002584]
37422
37345
-
Val
TAC
[Ensembl]
¡û
>C11121247
CP002584
Bacteroidota
Sphingobacterium sp. 21 [CP002584]
37292
37217
-
Val
TAC
[Ensembl]
¡û
>W11140079
AEKX01000011
Bacteroidota
Pseudopedobacter saltans DSM 12145 [AEKX]
136462
136385
-
Val
TAC
[ENA]
¡û
>W11140080
AEKX01000011
Bacteroidota
Pseudopedobacter saltans DSM 12145 [AEKX]
136367
136292
-
Val
TAC
[ENA]
¡û
>C161040190
CP012155
Bacteroidota
Bacteroidetes bacterium UKL13-3 [CP012155]
1922836
1922759
-
Val
TAC
-
¡û
>W1710521477
FNGK01000016
Bacteroidota
Sphingobacterium mizutaii [FNGK]
676
599
-
Val
TAC
[ENA]
¡û
>W1710543714
FOAF01000017
Bacteroidota
Olivibacter domesticus domesticum [FOAF]
40980
40903
-
Val
TAC
[ENA]
¡û
>W1710543716
FOAF01000019
Bacteroidota
Olivibacter domesticus domesticum [FOAF]
34079
34002
-
Val
TAC
[ENA]
¡û
>W1710608365
FXAU01000007
Bacteroidota
Sphingobacterium psychroaquaticum [FXAU]
125375
125450
+
Val
TAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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