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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.161588 (47 seq.)
>W1710809613
LKEQ01000009
Alphaproteobacteria
Wolbachia endosymbiont of Trichogramma pretiosum [LKEQ]
116926
116850
-
Met
CAT
[ENA]
¡û
>W1711055051
LRUH01000030
Alphaproteobacteria
Wolbachia endosymbiont of Laodelphax striatellus of Laodelphax striatella [LRUH]
6077
6001
-
Met
CAT
[ENA]
¡û
>W1711088443
LSYX01000085
Alphaproteobacteria
Wolbachia endosymbiont of Dactylopius coccus [LSYX]
5513
5589
+
Met
CAT
[ENA]
¡û
>W1711088462
LSYY01000045
Alphaproteobacteria
Wolbachia endosymbiont of Dactylopius coccus [LSYY]
23252
23328
+
Met
CAT
[ENA]
¡û
>W1712108445
NJBR01000097
Alphaproteobacteria
Wolbachia endosymbiont of Wuchereria bancrofti [NJBR]
600
526
-
Met
CAT
[ENA]
¡û
>W131052816
AMZJ01000052
Alphaproteobacteria
Wolbachia endosymbiont of Diaphorina citri [AMZJ]
5207
5131
-
Met
CAT
[ENA]
¡û
>W131242640
CAOH01000080
Alphaproteobacteria
Wolbachia pipientis wBol1-b [CAOH]
6092
6016
-
Met
CAT
[ENA]
¡û
>W131243114
CAOU02000030
Alphaproteobacteria
Wolbachia endosymbiont of Drosophila suzukii str. valsugana of Drosophila suzukii [CAOU]
16709
16633
-
Met
CAT
[ENA]
¡û
>C026875
AE017321
Alphaproteobacteria
Wolbachia endosymbiont strain TRS of Brugia malayi [AE017321]
798183
798110
-
Met
CAT
[Ensembl]
¡û
>w005401
AAGB01000024
Alphaproteobacteria
Wolbachia endosymbiont of Drosophila ananassae [AAGB]
1723
1799
+
Met
CAT
[ENA]
¡û
>WENV181405243
OGCC01000900
[OGCC] insect metagenome; haemolymph
722
798
+
Met
CAT
[ENA]
¢þ
>WENV181405293
OGCD01000070
[OGCD] insect metagenome; haemolymph
2458
2382
-
Met
CAT
[ENA]
¢þ
>WENV181406102
OGCF01000404
[OGCF] insect metagenome; haemolymph
2457
2381
-
Met
CAT
[ENA]
¢þ
>W141240233
CAGB01000143
Alphaproteobacteria
Wolbachia pipientis wAlbB [CAGB]
8454
8530
+
Met
CAT
[ENA]
¡û
>C08011420
AM999887
Alphaproteobacteria
Wolbachia endosymbiont of Culex quinquefasciatus Pel wPip [AM999887]
770469
770396
-
Met
CAT
[Ensembl]
¡û
>C191074346
CP031221
Alphaproteobacteria
Wolbachia pipientis wAlbB [CP031221]
194639
194563
-
Met
CAT
-
¡û
>C191123123
CP034333
Alphaproteobacteria
Wolbachia endosymbiont of Brugia malayi [CP034333]
130711
130637
-
Met
CAT
-
¡û
>C191123146
CP034334
Alphaproteobacteria
Wolbachia endosymbiont of Drosophila mauritiana wMau [CP034334]
1153485
1153409
-
Met
CAT
-
¡û
>C191123180
CP034335
Alphaproteobacteria
Wolbachia endosymbiont of Drosophila mauritiana wMau [CP034335]
1153488
1153412
-
Met
CAT
-
¡û
>W09113867
ABZA01000003
Alphaproteobacteria
Wolbachia endosymbiont of Culex quinquefasciatus of Culex quinquefasciatus JHB [ABZA]
311513
311437
-
Met
CAT
[ENA]
¡û
>W1910213477
FMKF01000287
Alphaproteobacteria
Wolbachia endosymbiont of Bemisia tabaci [FMKF]
570
646
+
Met
CAT
[ENA]
¡û
>W1910753956
MKIF01000056
Alphaproteobacteria
Wolbachia sp. wRi [MKIF]
1430
1506
+
Met
CAT
[ENA]
¡û
>W1910794365
MRWX01000033
Alphaproteobacteria
Wolbachia pipientis wAus [MRWX]
6424
6348
-
Met
CAT
[ENA]
¡û
>W1910802362
MSYL01000214
Alphaproteobacteria
Wolbachia sp. wRi_2 [MSYL]
3192
3116
-
Met
CAT
[ENA]
¡û
>C09111275
CP001391
Alphaproteobacteria
Wolbachia sp. wRi [CP001391]
934962
934886
-
Met
CAT
[Ensembl]
¡û
>W1911239472
NSDR01000104
Alphaproteobacteria
Wolbachia endosymbiont of Drosophila ananassae of Drosophila ananassae wAna_India [NSDR]
3811
3735
-
Met
CAT
[ENA]
¡û
>W1911239479
NSDS01000003
Alphaproteobacteria
Wolbachia endosymbiont of Drosophila ananassae of Drosophila ananassae wAna_Hawaii [NSDS]
3757
3681
-
Met
CAT
[ENA]
¡û
>W1911239537
NSDT01000095
Alphaproteobacteria
Wolbachia endosymbiont of Drosophila ananassae of Drosophila ananassae wAna_Indonesia [NSDT]
2062
2138
+
Met
CAT
[ENA]
¡û
>W1911281114
NTHL01000064
Alphaproteobacteria
Wolbachia endosymbiont of Drosophila subpulchrella of Drosophila subpulchrella wSpc [NTHL]
4847
4771
-
Met
CAT
[ENA]
¡û
>W1911412142
NWVH01000013
Alphaproteobacteria
Wolbachia pipientis FL2016 [NWVH]
302
226
-
Met
CAT
[ENA]
¡û
>W1911412187
NWVI01000034
Alphaproteobacteria
Wolbachia pipientis HN2016 [NWVI]
8644
8720
+
Met
CAT
[ENA]
¡û
>W1911545111
OUNE01000059
Alphaproteobacteria
Wolbachia endosymbiont of Aleurodicus dispersus WBAD (OUNE) of Aleurodicus dispersus WBAD [OUNE]
6230
6306
+
Met
CAT
[ENA]
¡û
>W1911545136
OUNF01000019
Alphaproteobacteria
Wolbachia endosymbiont of Aleurodicus floccissimus WBAF (OUNF) of Aleurodicus floccissimus WBAF [OUNF]
2780
2856
+
Met
CAT
[ENA]
¡û
>W1810758350
QPIP01000049
Alphaproteobacteria
Wolbachia endosymbiont of Cylisticus convexus of Cylisticus convexus Wcon [QPIP]
6765
6689
-
Met
CAT
[ENA]
¡û
>C151001141
AP013028
Alphaproteobacteria
Wolbachia endosymbiont of Cimex lectularius wCle [AP013028]
772470
772394
-
Met
CAT
[Ensembl]
¡û
>C151101099
HG810405
Alphaproteobacteria
Wolbachia endosymbiont of Onchocerca volvulus str. Cameroon [HG810405]
816035
815959
-
Met
CAT
-
¡û
>W1510562614
CTEH01000002
Alphaproteobacteria
Wolbachia endosymbiont of Culex molestus wPip_Mol of Culex molestus [CTEH]
268589
268513
-
Met
CAT
[ENA]
¡û
>W1511183978
JMCJ01000933
Alphaproteobacteria
Wolbachia endosymbiont of Dactylopius coccus of Dactylopius coccus wCoc1 [JMCJ]
330
254
-
Met
CAT
[ENA]
¡û
>W1511536218
JYPC01000024
Alphaproteobacteria
Wolbachia endosymbiont of Operophtera brumata of Operophtera brumata Ob_Wba [JYPC]
1354
1430
+
Met
CAT
[ENA]
¡û
>W11145941
AERW01000167
Alphaproteobacteria
Wolbachia endosymbiont of Nasonia vitripennis wVitB of Nasonia vitripennis [AERW]
276
200
-
Met
CAT
[ENA]
¡û
>W11185741
CACK01000116
Alphaproteobacteria
Wolbachia endosymbiont of Culex pipiens molestus [CACK]
9973
10049
+
Met
CAT
[ENA]
¡û
>C131009133
CP003883
Alphaproteobacteria
Wolbachia endosymbiont of Drosophila simulans wNo [CP003883]
432073
431997
-
Met
CAT
[Ensembl]
¡û
>C131019593
HE660029
Alphaproteobacteria
Wolbachia endosymbiont of Onchocerca ochengi wOo [HE660029]
219842
219766
-
Met
CAT
[Ensembl]
¡û
>W1610673719
LKEQ01000009
Alphaproteobacteria
Wolbachia endosymbiont of Trichogramma pretiosum [LKEQ]
116926
116850
-
Met
CAT
[ENA]
¡û
>W1610896097
LRUH01000030
Alphaproteobacteria
Wolbachia endosymbiont of Laodelphax striatellus of Laodelphax striatella [LRUH]
6077
6001
-
Met
CAT
[ENA]
¡û
>W1610922982
LSYX01000085
Alphaproteobacteria
Wolbachia endosymbiont of Dactylopius coccus [LSYX]
5513
5589
+
Met
CAT
[ENA]
¡û
>W1610923001
LSYY01000045
Alphaproteobacteria
Wolbachia endosymbiont of Dactylopius coccus [LSYY]
23252
23328
+
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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