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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.161617 (85 seq.)
>W1710905367
LNNF01000035
Bacteroidota
Flavobacterium psychrophilum [LNNF]
24958
25034
+
His
GTG
[ENA]
¡û
>W1710914536
LNTP01000046
Bacteroidota
Flavobacterium psychrophilum [LNTP]
24958
25034
+
His
GTG
[ENA]
¡û
>W1710914597
LNTQ01000138
Bacteroidota
Flavobacterium psychrophilum [LNTQ]
24958
25034
+
His
GTG
[ENA]
¡û
>W1711053991
LRTL01000003
Bacteroidota
Flavobacterium psychrophilum [LRTL]
328086
328010
-
His
GTG
[ENA]
¡û
>W1711431491
MIJV01000002
Bacteroidota
Flavobacterium psychrophilum [MIJV]
31843
31919
+
His
GTG
[ENA]
¡û
>W1711431535
MIJW01000018
Bacteroidota
Flavobacterium psychrophilum [MIJW]
27225
27301
+
His
GTG
[ENA]
¡û
>W1711712456
MTBY01000018
Bacteroidota
Flavobacterium psychrophilum [MTBY]
45303
45227
-
His
GTG
[ENA]
¡û
>W1711712491
MTBZ01000013
Bacteroidota
Flavobacterium psychrophilum [MTBZ]
55666
55590
-
His
GTG
[ENA]
¡û
>W1711712577
MTCB01000012
Bacteroidota
Flavobacterium psychrophilum [MTCB]
110960
110884
-
His
GTG
[ENA]
¡û
>W1711712607
MTCC01000011
Bacteroidota
Flavobacterium psychrophilum [MTCC]
22350
22274
-
His
GTG
[ENA]
¡û
>W1711712659
MTCD01000351
Bacteroidota
Flavobacterium psychrophilum [MTCD]
2387
2463
+
His
GTG
[ENA]
¡û
>C009533
AM398681
Bacteroidota
Flavobacterium psychrophilum JIP02/86 [AM398681]
779627
779551
-
His
GTG
[Ensembl]
¡û
>w013021
AAMZ01000001
Bacteroidota
Dokdonia sp. MED134 MED134 [AAMZ]
11302
11224
-
His
GTG
[ENA]
¡û
>C181220263
LT670843
Bacteroidota
Flavobacterium psychrophilum OSU THCO2-90 [LT670843]
1813116
1813190
+
His
GTG
-
¡û
>W1910184602
BJSV01000076
Bacteroidota
Flavobacterium psychrophilum NNS1-1804 [BJSV]
5044
4970
-
His
GTG
[ENA]
¡û
>W1910184614
BJSW01000018
Bacteroidota
Flavobacterium psychrophilum NNS2-1804 [BJSW]
5022
4948
-
His
GTG
[ENA]
¡û
>W1910184644
BJSX01000001
Bacteroidota
Flavobacterium psychrophilum NNS4-1804 [BJSX]
5021
4947
-
His
GTG
[ENA]
¡û
>W1910184718
BJSY01000102
Bacteroidota
Flavobacterium psychrophilum NNS5-1804 [BJSY]
4998
4924
-
His
GTG
[ENA]
¡û
>W1910184719
BJSZ01000003
Bacteroidota
Flavobacterium psychrophilum NNS6-1804 [BJSZ]
30777
30851
+
His
GTG
[ENA]
¡û
>W1910184769
BJTA01000016
Bacteroidota
Flavobacterium psychrophilum NNS7-1804 [BJTA]
31075
31149
+
His
GTG
[ENA]
¡û
>W1910184870
BJTD01000009
Bacteroidota
Flavobacterium psychrophilum KKAC-1706 [BJTD]
31065
31139
+
His
GTG
[ENA]
¡û
>W1910184932
BJTE01000051
Bacteroidota
Flavobacterium psychrophilum KKOK-1706 [BJTE]
4998
4924
-
His
GTG
[ENA]
¡û
>W1910184946
BJTF01000006
Bacteroidota
Flavobacterium psychrophilum KHIR-1705 [BJTF]
4998
4924
-
His
GTG
[ENA]
¡û
>W1910502996
FYBY01000051
Bacteroidota
Flavobacterium psychrophilum CH8 [FYBY]
24866
24940
+
His
GTG
[ENA]
¡û
>W1910503010
FYBZ01000004
Bacteroidota
Flavobacterium psychrophilum FRGDSA 1882/11 [FYBZ]
145259
145185
-
His
GTG
[ENA]
¡û
>W1910503075
FYCB01000021
Bacteroidota
Flavobacterium psychrophilum DK150 [FYCB]
34415
34489
+
His
GTG
[ENA]
¡û
>W1910503103
FYCC01000009
Bacteroidota
Flavobacterium psychrophilum FI056 [FYCC]
24863
24937
+
His
GTG
[ENA]
¡û
>W1910503142
FYCD01000018
Bacteroidota
Flavobacterium psychrophilum DK001 [FYCD]
45072
44998
-
His
GTG
[ENA]
¡û
>W1910503228
FYCF01000039
Bacteroidota
Flavobacterium psychrophilum DK002 [FYCF]
45064
44990
-
His
GTG
[ENA]
¡û
>W1910503243
FYCG01000018
Bacteroidota
Flavobacterium psychrophilum FI070 [FYCG]
94903
94829
-
His
GTG
[ENA]
¡û
>W1910503293
FYCH01000043
Bacteroidota
Flavobacterium psychrophilum CH1895 [FYCH]
24864
24938
+
His
GTG
[ENA]
¡û
>W1910503320
FYCI01000040
Bacteroidota
Flavobacterium psychrophilum DK095 [FYCI]
34414
34488
+
His
GTG
[ENA]
¡û
>W1910503534
FYCM01000215
Bacteroidota
Flavobacterium psychrophilum FPC 831 [FYCM]
16253
16327
+
His
GTG
[ENA]
¡û
>W1910503547
FYCN01000148
Bacteroidota
Flavobacterium psychrophilum JIP 08/99 [FYCN]
6611
6685
+
His
GTG
[ENA]
¡û
>W1910503554
FYCO01000002
Bacteroidota
Flavobacterium psychrophilum IT02 [FYCO]
34402
34476
+
His
GTG
[ENA]
¡û
>W1910503610
FYCP01000158
Bacteroidota
Flavobacterium psychrophilum KU 051128-10 [FYCP]
4627
4553
-
His
GTG
[ENA]
¡û
>W1910503630
FYCQ01000177
Bacteroidota
Flavobacterium psychrophilum KU 061128-1 [FYCQ]
4626
4552
-
His
GTG
[ENA]
¡û
>W1910503663
FYCS01000020
Bacteroidota
Flavobacterium psychrophilum IT09 [FYCS]
24864
24938
+
His
GTG
[ENA]
¡û
>W1910503703
FYCT01000028
Bacteroidota
Flavobacterium psychrophilum FI166 [FYCT]
24861
24935
+
His
GTG
[ENA]
¡û
>W1910503725
FYCU01000017
Bacteroidota
Flavobacterium psychrophilum KU 060626-4 [FYCU]
201
127
-
His
GTG
[ENA]
¡û
>W1910503761
FYCV01000152
Bacteroidota
Flavobacterium psychrophilum KU 060626-59 [FYCV]
4626
4552
-
His
GTG
[ENA]
¡û
>W1910503783
FYCW01000016
Bacteroidota
Flavobacterium psychrophilum LM-01-Fp [FYCW]
45065
44991
-
His
GTG
[ENA]
¡û
>W1910503824
FYCX01000040
Bacteroidota
Flavobacterium psychrophilum NO004 [FYCX]
106340
106266
-
His
GTG
[ENA]
¡û
>W1910503865
FYCY01000032
Bacteroidota
Flavobacterium psychrophilum NO014 [FYCY]
24861
24935
+
His
GTG
[ENA]
¡û
>W1910503894
FYCZ01000013
Bacteroidota
Flavobacterium psychrophilum LM-02-Fp [FYCZ]
108244
108170
-
His
GTG
[ENA]
¡û
>W1910503933
FYDA01000040
Bacteroidota
Flavobacterium psychrophilum NO042 [FYDA]
21800
21874
+
His
GTG
[ENA]
¡û
>W1910503978
FYDB01000044
Bacteroidota
Flavobacterium psychrophilum NO098 [FYDB]
35471
35545
+
His
GTG
[ENA]
¡û
>W1910503991
FYDC01000002
Bacteroidota
Flavobacterium psychrophilum NO083 [FYDC]
108273
108199
-
His
GTG
[ENA]
¡û
>W1910504128
FYDF01000087
Bacteroidota
Flavobacterium psychrophilum LVDJ XP189 [FYDF]
6561
6635
+
His
GTG
[ENA]
¡û
>W1910505680
FYEO01000044
Bacteroidota
Flavobacterium psychrophilum FPC 840 [FYEO]
6613
6687
+
His
GTG
[ENA]
¡û
>W1910576474
JSCD01000001
Bacteroidota
Flavobacterium psychrophilum 10 [JSCD]
22350
22276
-
His
GTG
[ENA]
¡û
>W1910576635
JSWL01000009
Bacteroidota
Flavobacterium psychrophilum IWL08 [JSWL]
110960
110886
-
His
GTG
[ENA]
¡û
>W1910809486
MUHE01000005
Bacteroidota
Flavobacterium psychrophilum DSM 3660 = ATCC 49418 [MUHE]
227661
227587
-
His
GTG
[ENA]
¡û
>C151018499
CP007206
Bacteroidota
Flavobacterium psychrophilum FPG101 [CP007206]
1802660
1802736
+
His
GTG
[Ensembl]
¡û
>C151018570
CP007207
Bacteroidota
Flavobacterium psychrophilum FPG3 [CP007207]
1246650
1246574
-
His
GTG
[Ensembl]
¡û
>C151030335
CP007627
Bacteroidota
Flavobacterium psychrophilum CSF259-93 [CP007627]
1853065
1853141
+
His
GTG
[Ensembl]
¡û
>C151038987
CP008878
Bacteroidota
Flavobacterium psychrophilum V3-5 [CP008878]
721824
721748
-
His
GTG
[Ensembl]
¡û
>C151039025
CP008881
Bacteroidota
Flavobacterium psychrophilum V4-24 [CP008881]
706956
706880
-
His
GTG
[Ensembl]
¡û
>C151039062
CP008883
Bacteroidota
Flavobacterium psychrophilum v4-33 [CP008883]
717131
717055
-
His
GTG
[Ensembl]
¡û
>C151039552
CP008902
Bacteroidota
Flavobacterium psychrophilum 950106-1/1 [CP008902]
711635
711559
-
His
GTG
[Ensembl]
¡û
>C151048563
CP009301
Bacteroidota
Dokdonia sp. MED134 [CP009301]
718761
718835
+
His
GTG
[Ensembl]
¡û
>C151065085
CP010274
Bacteroidota
Flavobacterium psychrophilum 5 [CP010274]
778008
777932
-
His
GTG
-
¡û
>C151065133
CP010276
Bacteroidota
Flavobacterium psychrophilum PG2 [CP010276]
777796
777720
-
His
GTG
-
¡û
>C151072402
CP010798
Bacteroidota
Flavobacterium psychrophilum [CP010798]
814866
814790
-
His
GTG
-
¡û
>W1511357156
JRWA01000007
Bacteroidota
Flavobacterium psychrophilum CSF-259-93 [JRWA]
70999
71075
+
His
GTG
[ENA]
¡û
>W1511357197
JRWB01000022
Bacteroidota
Flavobacterium psychrophilum CN [JRWB]
70983
71059
+
His
GTG
[ENA]
¡û
>W1511357241
JRWC01000005
Bacteroidota
Flavobacterium psychrophilum CR [JRWC]
70974
71050
+
His
GTG
[ENA]
¡û
>W1511357278
JRWD01000037
Bacteroidota
Flavobacterium psychrophilum THC 02-90 [JRWD]
26912
26836
-
His
GTG
[ENA]
¡û
>W1511357325
JRWE01000037
Bacteroidota
Flavobacterium psychrophilum TN [JRWE]
26912
26836
-
His
GTG
[ENA]
¡û
>W1511357372
JRWF01000035
Bacteroidota
Flavobacterium psychrophilum TR [JRWF]
26911
26835
-
His
GTG
[ENA]
¡û
>W1511360763
JSAQ01000001
Bacteroidota
Dokdonia donghaensis DSW-1 [JSAQ]
218864
218790
-
His
GTG
[ENA]
¡û
>C161024452
CP010275
Bacteroidota
Flavobacterium psychrophilum MH1 [CP010275]
777023
776947
-
His
GTG
-
¡û
>C161024500
CP010277
Bacteroidota
Flavobacterium psychrophilum VQ50 [CP010277]
778502
778426
-
His
GTG
-
¡û
>C161024548
CP010278
Bacteroidota
Flavobacterium psychrophilum 3 [CP010278]
778528
778452
-
His
GTG
-
¡û
>C161083525
CP015125
Bacteroidota
Dokdonia donghaensis DSW-1 [CP015125]
2650827
2650901
+
His
GTG
-
¡û
>W1610062202
BCNG01000042
Bacteroidota
Flavobacterium psychrophilum [BCNG]
15223
15147
-
His
GTG
[ENA]
¡û
>W1610764381
LNNF01000035
Bacteroidota
Flavobacterium psychrophilum [LNNF]
24958
25034
+
His
GTG
[ENA]
¡û
>W1610772895
LNTP01000046
Bacteroidota
Flavobacterium psychrophilum [LNTP]
24958
25034
+
His
GTG
[ENA]
¡û
>W1610772956
LNTQ01000138
Bacteroidota
Flavobacterium psychrophilum [LNTQ]
24958
25034
+
His
GTG
[ENA]
¡û
>W1610895179
LRTL01000003
Bacteroidota
Flavobacterium psychrophilum [LRTL]
328086
328010
-
His
GTG
[ENA]
¡û
>WENV080375
ABCO01000005
Unidentified eubacterium SCB49
102242
102320
+
His
GTG
[ENA]
>W1710059743
BCNG01000042
Bacteroidota
Flavobacterium psychrophilum [BCNG]
15223
15147
-
His
GTG
[ENA]
¡û
>W1710087869
BDSH01000025
Bacteroidota
Flavobacterium psychrophilum [BDSH]
8151
8227
+
His
GTG
[ENA]
¡û
>W1710507336
FMVE01000012
Bacteroidota
Flavobacterium psychrophilum DSM 3660 [FMVE]
63136
63060
-
His
GTG
[ENA]
¡û
>W1710555822
FOJT01000002
Bacteroidota
Flavobacterium swingsii [FOJT]
56129
56053
-
His
GTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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