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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.161735 (71 seq.)
>W1710778277
LJCV01000004
Actinomycetota
Actinobacteria bacterium OK074 [LJCV]
10118
10193
+
Asp
GTC
[ENA]
¡û
>W1710778325
LJCV01000273
Actinomycetota
Actinobacteria bacterium OK074 [LJCV]
1425
1350
-
Asp
GTC
[ENA]
¡û
>W1710784277
LJGV01000021
Actinomycetota
Streptomyces qinglanensis [LJGV]
373507
373582
+
Asp
GTC
[ENA]
¡û
>W1711455833
MJAH01000028
Actinomycetota
Streptomyces sp. LUP47B LUP47b [MJAH]
47693
47768
+
Asp
GTC
[ENA]
¡û
>W1711722112
MTKC01000003
Actinomycetota
Streptomyces griseofuscus [MTKC]
2150190
2150265
+
Asp
GTC
[ENA]
¡û
>W1711750796
MUNF01000064
Actinomycetota
Streptomyces murinus [MUNF]
3641
3716
+
Asp
GTC
[ENA]
¡û
>W131160463
AQWO01000024
Actinomycetota
Streptomyces sp. FxanaC1 [AQWO]
49553
49478
-
Asp
GTC
[ENA]
¡û
>W131177838
ARLC01000021
Actinomycetota
Streptomyces sulphureus DSM 40104 [ARLC]
33087
33162
+
Asp
GTC
[ENA]
¡û
>W131177840
ARLC01000021
Actinomycetota
Streptomyces sulphureus DSM 40104 [ARLC]
39301
39376
+
Asp
GTC
[ENA]
¡û
>W131234108
AUKN01000010
Actinomycetota
Streptomyces sp. CNT318 [AUKN]
292168
292243
+
Asp
GTC
[ENA]
¡û
>W131234339
AUKR01000017
Actinomycetota
Streptomyces sp. TAA040 [AUKR]
7902
7977
+
Asp
GTC
[ENA]
¡û
>W131241198
BARF01000084
Actinomycetota
Streptomyces prunicolor NBRC 13075 [BARF]
176185
176260
+
Asp
GTC
[ENA]
¡û
>W131241200
BARF01000084
Actinomycetota
Streptomyces prunicolor NBRC 13075 [BARF]
181030
181105
+
Asp
GTC
[ENA]
¡û
>W131241277
BARG01000083
Actinomycetota
Streptomyces hokutonensis R1-NS-10 [BARG]
24577
24502
-
Asp
GTC
[ENA]
¡û
>C171049501
CP016438
Actinomycetota
Streptomyces lincolnensis NRRL 2936 [CP016438]
4851222
4851297
+
Asp
GTC
-
¡û
>WENV180304559
OBJI01126427
[OBJI] soil metagenome; soil
16
91
+
Asp
GTC
[ENA]
¢þ
>WENV180320760
OBKQ01016871
[OBKQ] soil metagenome; Clay
527
452
-
Asp
GTC
[ENA]
¢þ
>WENV180331449
OBLA01056951
[OBLA] soil metagenome; Alaskan Permafrost
123
198
+
Asp
GTC
[ENA]
¢þ
>WENV180342445
OBLJ01020564
[OBLJ] soil metagenome; Clay
558
633
+
Asp
GTC
[ENA]
¢þ
>WENV180344875
OBLL01300503
[OBLL] soil metagenome; soil
157
82
-
Asp
GTC
[ENA]
¢þ
>WENV181285795
OFGU01000133
[OFGU] soil metagenome; Clay
10233
10308
+
Asp
GTC
[ENA]
¢þ
>WENV181286142
OFGV01000734
[OFGV] soil metagenome; Clay
4478
4553
+
Asp
GTC
[ENA]
¢þ
>WENV181286333
OFGV01018601
[OFGV] soil metagenome; Clay
178
103
-
Asp
GTC
[ENA]
¢þ
>WENV181292681
OFHF01005838
[OFHF] soil metagenome; Clay
1083
1008
-
Asp
GTC
[ENA]
¢þ
>WENV181293568
OFHG01008523
[OFHG] soil metagenome; Clay
745
820
+
Asp
GTC
[ENA]
¢þ
>WENV181294687
OFHH01025322
[OFHH] soil metagenome; Clay
624
699
+
Asp
GTC
[ENA]
¢þ
>WENV181296820
OFHK01000472
[OFHK] soil metagenome; Clay
10328
10403
+
Asp
GTC
[ENA]
¢þ
>W141463804
JFJQ01000920
Actinomycetota
Streptomyces sp. Tu 6176 [JFJQ]
5771
5696
-
Asp
GTC
[ENA]
¡û
>W141463806
JFJQ01000920
Actinomycetota
Streptomyces sp. Tu 6176 [JFJQ]
147
70
-
Asp
GTC
[ENA]
¡û
>C181072022
CP022744
Actinomycetota
Streptomyces lincolnensis LC-G [CP022744]
4875681
4875756
+
Asp
GTC
-
¡û
>C181130279
CP026304
Actinomycetota
Streptomyces lunaelactis MM109 [CP026304]
4142483
4142558
+
Asp
GTC
-
¡û
>C181130281
CP026304
Actinomycetota
Streptomyces lunaelactis MM109 [CP026304]
4148932
4149007
+
Asp
GTC
-
¡û
>C191061740
CP028719
Actinomycetota
Streptomyces sp. endophyte_N2 [CP028719]
4211888
4211963
+
Asp
GTC
-
¡û
>C191100076
CP033073
Actinomycetota
Streptomyces dangxiongensis Z022 [CP033073]
4160144
4160069
-
Asp
GTC
-
¡û
>W141755451
JNWO01000029
Actinomycetota
Streptomyces xylophagus [JNWO]
69308
69383
+
Asp
GTC
[ENA]
¡û
>W141755453
JNWO01000029
Actinomycetota
Streptomyces xylophagus [JNWO]
74068
74143
+
Asp
GTC
[ENA]
¡û
>W141756441
JNXE01000034
Actinomycetota
Streptomyces sp. NRRL F-525 [JNXE]
31645
31570
-
Asp
GTC
[ENA]
¡û
>W141756443
JNXE01000034
Actinomycetota
Streptomyces sp. NRRL F-525 [JNXE]
26942
26867
-
Asp
GTC
[ENA]
¡û
>W141769705
JOFZ01000008
Actinomycetota
Streptomyces sp. NRRL F-5126 [JOFZ]
403458
403383
-
Asp
GTC
[ENA]
¡û
>W1910001426
AQRJ01000019
Actinomycetota
Streptomyces sp. AmelKG-E11A [AQRJ]
16530
16455
-
Asp
GTC
[ENA]
¡û
>W1910001474
AQRJ01000063
Actinomycetota
Streptomyces sp. AmelKG-E11A [AQRJ]
233096
233021
-
Asp
GTC
[ENA]
¡û
>W1910129682
BHZI01000222
Actinomycetota
Streptomyces otsuchiensis OTB305 [BHZI]
252
177
-
Asp
GTC
[ENA]
¡û
>W1910889781
NETX01000344
Actinomycetota
Streptomyces sp. SM14 [NETX]
5917
5842
-
Asp
GTC
[ENA]
¡û
>W1911083771
NNBP01000003
Actinomycetota
Streptomyces sp. CB02959 [NNBP]
39922
39997
+
Asp
GTC
[ENA]
¡û
>W1911574172
PDER01000003
Actinomycetota
Streptomyces griseofuscus 64 [PDER]
506322
506247
-
Asp
GTC
[ENA]
¡û
>W1911574231
PDES01000004
Actinomycetota
Streptomyces griseofuscus 199 [PDES]
40679
40754
+
Asp
GTC
[ENA]
¡û
>W1911718159
QQVZ01000001
Actinomycetota
Streptomyces sp. S816 [QQVZ]
2310050
2309975
-
Asp
GTC
[ENA]
¡û
>W1810694212
QLLW01000015
Actinomycetota
Streptomyces sp. PsTaAH-130 [QLLW]
166089
166014
-
Asp
GTC
[ENA]
¡û
>W1810735448
QOIN01000042
Actinomycetota
Streptomyces diacarni philanthi LHW51701 [QOIN]
260183
260258
+
Asp
GTC
[ENA]
¡û
>W1511401269
JTHL01000001
Actinomycetota
Streptomyces sp. 150FB [JTHL]
4273767
4273842
+
Asp
GTC
[ENA]
¡û
>W1511401271
JTHL01000001
Actinomycetota
Streptomyces sp. 150FB [JTHL]
4279369
4279444
+
Asp
GTC
[ENA]
¡û
>W1511401567
JTIY01000001
Actinomycetota
Streptomyces sp. AcH 505 [JTIY]
2036395
2036470
+
Asp
GTC
[ENA]
¡û
>W1511511577
JXTE01000027
Actinomycetota
Streptomyces sp. WM6386 [JXTE]
64990
65065
+
Asp
GTC
[ENA]
¡û
>C161021326
CP009313
Actinomycetota
Streptomyces nodosus ATCC 14899 [CP009313]
3608516
3608591
+
Asp
GTC
[Ensembl]
¡û
>W121067725
AJTQ01000058
Actinomycetota
Streptomyces xiaopingdaonensis L180 [AJTQ]
8860
8935
+
Asp
GTC
[ENA]
¡û
>W121067728
AJTQ01000059
Actinomycetota
Streptomyces xiaopingdaonensis L180 [AJTQ]
4040
4115
+
Asp
GTC
[ENA]
¡û
>W121104657
ALAP01000019
Actinomycetota
Streptomyces sp. AA1529 [ALAP]
117745
117670
-
Asp
GTC
[ENA]
¡û
>W1610551412
JYIJ01000019
Actinomycetota
Carbonactinospora thermoautotrophica thermoautotrophicus [JYIJ]
623967
624042
+
Asp
GTC
[ENA]
¡û
>W1610551465
JYIK01001092
Actinomycetota
Carbonactinospora thermoautotrophica thermoautotrophicus [JYIK]
3013
3088
+
Asp
GTC
[ENA]
¡û
>W1610578271
LAXD01000001
Actinomycetota
Carbonactinospora thermoautotrophica thermoautotrophicus [LAXD]
180137
180062
-
Asp
GTC
[ENA]
¡û
>W1610642496
LJCV01000004
Actinomycetota
Actinobacteria bacterium OK074 [LJCV]
10118
10193
+
Asp
GTC
[ENA]
¡û
>W1610642544
LJCV01000273
Actinomycetota
Actinobacteria bacterium OK074 [LJCV]
1425
1350
-
Asp
GTC
[ENA]
¡û
>W1710503332
FMDH01000155
Actinomycetota
Streptomyces sp. LamerLS-31b [FMDH]
28024
28099
+
Asp
GTC
[ENA]
¡û
>W1710503917
FMHM01000004
Actinomycetota
Streptomyces sp. AmelKG-E11A Streptomyces [FMHM]
233096
233021
-
Asp
GTC
[ENA]
¡û
>W1710503965
FMHM01000042
Actinomycetota
Streptomyces sp. AmelKG-E11A Streptomyces [FMHM]
16530
16455
-
Asp
GTC
[ENA]
¡û
>W1710536774
FNTK01000001
Actinomycetota
Streptomyces sp. 3213.3 3213 [FNTK]
5838906
5838829
-
Asp
GTC
[ENA]
¡û
>W1710661685
JYIJ01000019
Actinomycetota
Carbonactinospora thermoautotrophica thermoautotrophicus [JYIJ]
623967
624042
+
Asp
GTC
[ENA]
¡û
>W1710661738
JYIK01001092
Actinomycetota
Carbonactinospora thermoautotrophica thermoautotrophicus [JYIK]
3013
3088
+
Asp
GTC
[ENA]
¡û
>W1710697144
LAXD01000001
Actinomycetota
Carbonactinospora thermoautotrophica thermoautotrophicus [LAXD]
180137
180062
-
Asp
GTC
[ENA]
¡û
>W1710717921
LFBV01000001
Actinomycetota
Streptomyces uncialis [LFBV]
557057
556982
-
Asp
GTC
[ENA]
¡û
>W1710717931
LFBV01000002
Actinomycetota
Streptomyces uncialis [LFBV]
1318271
1318196
-
Asp
GTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK