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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.162181 (27 seq.)
>W1711027045
LRDC01000001
Gammaproteobacteria
Shewanella frigidimarina [LRDC]
485356
485280
-
Met
CAT
[ENA]
¡û
>W1711340595
MCBT01000046
Gammaproteobacteria
Shewanella colwelliana [MCBT]
229475
229399
-
Met
CAT
[ENA]
¡û
>W131146058
AQGQ01000056
Gammaproteobacteria
Aeromonas molluscorum 848 [AQGQ]
11732
11808
+
Met
CAT
[ENA]
¡û
>w021079
AAVJ01000015
Gammaproteobacteria
Shewanella pealeana ATCC 700345 [AAVJ]
105551
105478
-
Met
CAT
[ENA]
¡û
>C171108650
CP020472
Gammaproteobacteria
Shewanella japonica KCTC 22435 [CP020472]
1403569
1403493
-
Met
CAT
-
¡û
>W08005689
ABIC01000033
Gammaproteobacteria
Shewanella benthica KT99 [ABIC]
36265
36192
-
Met
CAT
[ENA]
¡û
>C08010253
CP000851
Gammaproteobacteria
Shewanella pealeana ATCC 700345 [CP000851]
1169018
1168945
-
Met
CAT
[Ensembl]
¡û
>C08009934
CP000931
Gammaproteobacteria
Shewanella halifaxensis HAW-EB4 [CP000931]
1234477
1234404
-
Met
CAT
[Ensembl]
¡û
>W141276811
JAEC01000005
Gammaproteobacteria
Shewanella colwelliana ATCC 39565 [JAEC]
43824
43900
+
Met
CAT
[ENA]
¡û
>WENV170022368
BCQK01007197
[BCQK] museum specimen metagenome; Liagora japonica specimen isolated from Nada, Gobou, Wakayama
1745
1669
-
Met
CAT
[ENA]
¢þ
>WENV170023424
BCQK01252484
[BCQK] museum specimen metagenome; Liagora japonica specimen isolated from Nada, Gobou, Wakayama
126
202
+
Met
CAT
[ENA]
¢þ
>WENV170023471
BCQK01261132
[BCQK] museum specimen metagenome; Liagora japonica specimen isolated from Nada, Gobou, Wakayama
38
114
+
Met
CAT
[ENA]
¢þ
>C181214248
LS483452
Gammaproteobacteria
Shewanella benthica DB21MT-2 [LS483452]
1444782
1444706
-
Met
CAT
-
¡û
>C191117220
CP034015
Gammaproteobacteria
Shewanella livingstonensis LMG 19866 [CP034015]
3963734
3963810
+
Met
CAT
-
¡û
>C191156001
CP037952
Gammaproteobacteria
Parashewanella spongiae HJ039 [CP037952]
4268597
4268673
+
Met
CAT
-
¡û
>C191173187
CP039928
Gammaproteobacteria
Shewanella sp. MEBiC00475 [CP039928]
1083457
1083533
+
Met
CAT
-
¡û
>C191185913
CP041036
Gammaproteobacteria
Shewanella polaris SM1901 [CP041036]
1090022
1089946
-
Met
CAT
-
¡û
>W1910676942
MCTY01000165
Gammaproteobacteria
Shewanella sp. 10N.286.52.B9 [MCTY]
21744
21668
-
Met
CAT
[ENA]
¡û
>W1910679510
MCVG01000116
Gammaproteobacteria
Shewanella sp. 10N.286.48.B5 [MCVG]
131157
131233
+
Met
CAT
[ENA]
¡û
>W1911551632
OXJV01000001
Gammaproteobacteria
Shewanella algidipiscicola [OXJV]
540708
540632
-
Met
CAT
[ENA]
¡û
>W1911581960
PGVH01000056
Gammaproteobacteria
Shewanella sp. OPT22 [PGVH]
24748
24824
+
Met
CAT
[ENA]
¡û
>W1911710060
QPQT01000009
Gammaproteobacteria
Shewanella algidipiscicola LMG 23746 [QPQT]
44014
44090
+
Met
CAT
[ENA]
¡û
>W1911809478
QYYH01000050
Gammaproteobacteria
Parashewanella spongiae KCTC 22492 [QYYH]
13368
13444
+
Met
CAT
[ENA]
¡û
>C10112922
AP011177
Gammaproteobacteria
Shewanella violacea DSS12 [AP011177]
1025255
1025179
-
Met
CAT
[Ensembl]
¡û
>W1610460571
FKJK01000003
Gammaproteobacteria
Shewanella woodyi Alg231_23 [FKJK]
347126
347202
+
Met
CAT
[ENA]
¡û
>W1610875157
LRDC01000001
Gammaproteobacteria
Shewanella frigidimarina [LRDC]
485356
485280
-
Met
CAT
[ENA]
¡û
>W1710460135
FKJK01000003
Gammaproteobacteria
Shewanella woodyi Alg231_23 [FKJK]
347126
347202
+
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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