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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.162182 (38 seq.)
>W1711340553
MCBT01000015
Gammaproteobacteria
Shewanella colwelliana [MCBT]
13992
13916
-
Arg
CCG
[ENA]
¡û
>W1711624487
MPHJ01000016
Gammaproteobacteria
Shewanella sp. UCD-KL12 [MPHJ]
16866
16790
-
Arg
CCG
[ENA]
¡û
>C171033414
CP014782
Gammaproteobacteria
Shewanella psychrophila WP2 [CP014782]
3576167
3576091
-
Arg
CCG
-
¡û
>C019811
CP000507
Gammaproteobacteria
Shewanella amazonensis SB2B [CP000507]
3874837
3874761
-
Arg
CCG
[Ensembl]
¡û
>C022652
CP000606
Gammaproteobacteria
Shewanella loihica PV-4 [CP000606]
331983
332059
+
Arg
CCG
[Ensembl]
¡û
>w028500
ABDD01000001
Gammaproteobacteria
Shewanella sediminis HAW-EB3 [ABDD]
178542
178469
-
Arg
CCG
[ENA]
¡û
>w021066
AAVJ01000002
Gammaproteobacteria
Shewanella pealeana ATCC 700345 [AAVJ]
169670
169746
+
Arg
CCG
[ENA]
¡û
>w019943
AAUO01000001
Gammaproteobacteria
Shewanella woodyi ATCC 51908 [AAUO]
278975
279051
+
Arg
CCG
[ENA]
¡û
>W08005645
ABIC01000002
Gammaproteobacteria
Shewanella benthica KT99 [ABIC]
100324
100400
+
Arg
CCG
[ENA]
¡û
>C08010572
CP000821
Gammaproteobacteria
Shewanella sediminis HAW-EB3 [CP000821]
5093927
5093854
-
Arg
CCG
[Ensembl]
¡û
>C08010119
CP000851
Gammaproteobacteria
Shewanella pealeana ATCC 700345 [CP000851]
416766
416842
+
Arg
CCG
[Ensembl]
¡û
>WENV182556870
OJDH01000495
[OJDH] seawater metagenome; Sea water
12229
12305
+
Arg
CCG
[ENA]
¢þ
>C08009868
CP000931
Gammaproteobacteria
Shewanella halifaxensis HAW-EB4 [CP000931]
4785963
4785890
-
Arg
CCG
[Ensembl]
¡û
>W141276603
JADX01000027
Gammaproteobacteria
Shewanella fidelis ATCC BAA-318 [JADX]
306
230
-
Arg
CCG
[ENA]
¡û
>W141276841
JAEC01000035
Gammaproteobacteria
Shewanella colwelliana ATCC 39565 [JAEC]
29537
29613
+
Arg
CCG
[ENA]
¡û
>W141277061
JAEH01000030
Gammaproteobacteria
Shewanella waksmanii ATCC BAA-643 [JAEH]
13953
13877
-
Arg
CCG
[ENA]
¡û
>C08010716
CP000961
Gammaproteobacteria
Shewanella woodyi ATCC 51908 [CP000961]
587209
587285
+
Arg
CCG
[Ensembl]
¡û
>WENV183058313
OLHP01006603
[OLHP] seawater metagenome; Sea water
51
127
+
Arg
CCG
[ENA]
¢þ
>C181061282
CP022272
Gammaproteobacteria
Shewanella marisflavi EP1 [CP022272]
305161
305237
+
Arg
CCG
-
¡û
>C181214260
LS483452
Gammaproteobacteria
Shewanella benthica DB21MT-2 [LS483452]
12766
12690
-
Arg
CCG
-
¡û
>C191017614
CP020373
Gammaproteobacteria
Shewanella khirikhana TH2012 [CP020373]
3629449
3629373
-
Arg
CCG
-
¡û
>C191187167
CP041153
Gammaproteobacteria
Shewanella marisflavi ECSMB14101 [CP041153]
289733
289809
+
Arg
CCG
-
¡û
>W09102768
AAIN01000001
Gammaproteobacteria
Shewanella amazonensis SB2B [AAIN]
525014
525090
+
Arg
CCG
[ENA]
¡û
>W09104448
AALS01000001
Gammaproteobacteria
Shewanella loihica PV-4 [AALS]
272810
272734
-
Arg
CCG
[ENA]
¡û
>C09109782
CP000472
Gammaproteobacteria
Shewanella piezotolerans WP3 [CP000472]
387118
387194
+
Arg
CCG
[Ensembl]
¡û
>W1911551693
OXJV01000022
Gammaproteobacteria
Shewanella algidipiscicola [OXJV]
112300
112376
+
Arg
CCG
[ENA]
¡û
>W1911710067
QPQT01000014
Gammaproteobacteria
Shewanella algidipiscicola LMG 23746 [QPQT]
14610
14534
-
Arg
CCG
[ENA]
¡û
>W1810005538
BFBQ01000001
Gammaproteobacteria
Shewanella halifaxensis 6JANF4-E-4 [BFBQ]
2161583
2161659
+
Arg
CCG
[ENA]
¡û
>W1810155888
PJAZ01000041
Gammaproteobacteria
Shewanella sp. Bg11-22 [PJAZ]
14177
14101
-
Arg
CCG
[ENA]
¡û
>W1810156260
PJBE01000013
Gammaproteobacteria
Shewanella sp. Choline-02u-19 [PJBE]
3414266
3414190
-
Arg
CCG
[ENA]
¡û
>W1810156680
PJBL01000015
Gammaproteobacteria
Shewanella sp. GutCb [PJBL]
64221
64297
+
Arg
CCG
[ENA]
¡û
>W1810156774
PJBM01000223
Gammaproteobacteria
Shewanella sp. GutDb-MelDb [PJBM]
7929
7853
-
Arg
CCG
[ENA]
¡û
>W1810786648
QRCS01000028
Gammaproteobacteria
Shewanella corallii A687 [QRCS]
14635
14559
-
Arg
CCG
[ENA]
¡û
>C10112869
AP011177
Gammaproteobacteria
Shewanella violacea DSS12 [AP011177]
4408307
4408231
-
Arg
CCG
[Ensembl]
¡û
>W1511302188
JPII01000056
Gammaproteobacteria
Shewanella sp. cp20 [JPII]
40965
41041
+
Arg
CCG
[ENA]
¡û
>W1511366821
JSFF01000029
Gammaproteobacteria
Shewanella sp. ECSMB14101 [JSFF]
13246
13170
-
Arg
CCG
[ENA]
¡û
>W1610460602
FKJK01000005
Gammaproteobacteria
Shewanella woodyi Alg231_23 [FKJK]
279384
279308
-
Arg
CCG
[ENA]
¡û
>W1710460166
FKJK01000005
Gammaproteobacteria
Shewanella woodyi Alg231_23 [FKJK]
279384
279308
-
Arg
CCG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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