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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.162258 (41 seq.)
>W1710856312
LLZH01000306
Actinomycetota
Actinoplanes awajinensis subsp. mycoplanecinus [LLZH]
118005
117929
-
Ile
GAT
[ENA]
¡û
>C171131267
LT827010
Actinomycetota
Actinoplanes sp. SE50/110 [LT827010]
13472
13548
+
Ile
GAT
-
¡û
>W131165199
ARBJ01000046
Actinomycetota
Actinoplanes globisporus DSM 43857 [ARBJ]
22957
23033
+
Ile
GAT
[ENA]
¡û
>WENV180691704
OCZS010192063
[OCZS] soil metagenome; soil
562
488
-
Ile
GAT
[ENA]
¢þ
>W141242289
CAIE01000047
Actinomycetota
Micromonospora lupini str. Lupac 08 [CAIE]
43338
43414
+
Ile
GAT
[ENA]
¡û
>W141242290
CAIE01000048
Actinomycetota
Micromonospora lupini str. Lupac 08 [CAIE]
3690
3766
+
Ile
GAT
[ENA]
¡û
>C181078551
CP023298
Actinomycetota
Actinoplanes sp. SE50 [CP023298]
13472
13546
+
Ile
GAT
-
¡û
>C181162590
CP028158
Actinomycetota
Plantactinospora sp. BC1 [CP028158]
4048974
4048900
-
Ile
GAT
-
¡û
>C181162649
CP028159
Actinomycetota
Plantactinospora sp. BB1 [CP028159]
6859377
6859303
-
Ile
GAT
-
¡û
>C191007389
AP019371
Actinomycetota
Actinoplanes sp. OR16 [AP019371]
2310915
2310989
+
Ile
GAT
-
¡û
>W141758320
JNYN01001702
Actinomycetota
Actinoplanes liguriensis [JNYN]
1507
1431
-
Ile
GAT
[ENA]
¡û
>W141759960
JNZS01000009
Actinomycetota
Micromonospora parva [JNZS]
176114
176190
+
Ile
GAT
[ENA]
¡û
>W141761127
JOAN01000004
Actinomycetota
Micromonospora chokoriensis [JOAN]
122887
122811
-
Ile
GAT
[ENA]
¡û
>C141004708
CP006272
Actinomycetota
Actinoplanes friuliensis DSM 7358 [CP006272]
15824
15900
+
Ile
GAT
[Ensembl]
¡û
>W1911653612
QDGB01000150
Actinomycetota
Micromonospora ureilytica LB19 [QDGB]
9266
9341
+
Ile
GAT
[ENA]
¡û
>W1911676265
QGSY01000325
Actinomycetota
Micromonospora arida LB32 [QGSY]
8054
8129
+
Ile
GAT
[ENA]
¡û
>W1911676312
QGSZ01000326
Actinomycetota
Micromonospora inaquosa LB39 [QGSZ]
23732
23657
-
Ile
GAT
[ENA]
¡û
>W1911681206
QJUG01000075
Actinomycetota
Allorhizocola rhizosphaerae CPCC 204380 [QJUG]
13001
13075
+
Ile
GAT
[ENA]
¡û
>W1810072261
PEFG01000001
Actinomycetota
Micromonospora sp. CNZ299 [PEFG]
1375837
1375912
+
Ile
GAT
[ENA]
¡û
>W1810091091
PGGV01000016
Actinomycetota
Glycomyces xiaoerkulensis TRM 41368 [PGGV]
214151
214076
-
Ile
GAT
[ENA]
¡û
>W1810172739
PJMP01000001
Actinomycetota
Plantactinospora sp. CNZ320 [PJMP]
5053711
5053785
+
Ile
GAT
[ENA]
¡û
>W1810356543
PVMZ01000021
Actinomycetota
Actinoplanes italicus DSM 43146 [PVMZ]
193257
193183
-
Ile
GAT
[ENA]
¡û
>W1810389667
PXXW01000028
Actinomycetota
Micromonospora saelicesensis GAR05 [PXXW]
69359
69284
-
Ile
GAT
[ENA]
¡û
>W1810392096
PYAA01000013
Actinomycetota
Micromonospora noduli LAH08 [PYAA]
198681
198756
+
Ile
GAT
[ENA]
¡û
>W1810392171
PYAB01000031
Actinomycetota
Micromonospora noduli Lupac 07 [PYAB]
21191
21266
+
Ile
GAT
[ENA]
¡û
>W1810392213
PYAC01000021
Actinomycetota
Micromonospora noduli MED15 [PYAC]
21509
21584
+
Ile
GAT
[ENA]
¡û
>W1810392237
PYAD01000042
Actinomycetota
Micromonospora noduli ONO23 [PYAD]
72776
72701
-
Ile
GAT
[ENA]
¡û
>W1810392325
PYAE01000225
Actinomycetota
Micromonospora noduli ONO86 [PYAE]
1070
995
-
Ile
GAT
[ENA]
¡û
>W1810392395
PYAG01000038
Actinomycetota
Micromonospora saelicesensis PSN13 [PYAG]
74040
73965
-
Ile
GAT
[ENA]
¡û
>W1810392426
PYAH01000006
Actinomycetota
Micromonospora saelicesensis GAR06 [PYAH]
73303
73228
-
Ile
GAT
[ENA]
¡û
>W1810392474
PYAI01000019
Actinomycetota
Micromonospora saelicesensis PSN01 [PYAI]
7701
7626
-
Ile
GAT
[ENA]
¡û
>W1810392579
PYAJ01000026
Actinomycetota
Micromonospora saelicesensis Lupac 06 [PYAJ]
71244
71169
-
Ile
GAT
[ENA]
¡û
>W1810392635
PYAK01000026
Actinomycetota
Micromonospora noduli GUI43 [PYAK]
63297
63222
-
Ile
GAT
[ENA]
¡û
>W1810394640
PYBV01000021
Actinomycetota
Micromonospora arborensis NRRL 8041 [PYBV]
215521
215596
+
Ile
GAT
[ENA]
¡û
>W1810596671
QGGR01000039
Actinomycetota
Actinoplanes xinjiangensis DSM 45184 [QGGR]
47459
47385
-
Ile
GAT
[ENA]
¡û
>W1810694922
QLMJ01000010
Actinomycetota
Actinoplanes lutulentus CGMCC 4.7090 [QLMJ]
162635
162561
-
Ile
GAT
[ENA]
¡û
>C121001025
AP012319
Actinomycetota
Actinoplanes missouriensis 431 [AP012319]
14517
14593
+
Ile
GAT
[Ensembl]
¡û
>C121007217
CP003170
Actinomycetota
Actinoplanes sp. SE50/110 [CP003170]
13471
13547
+
Ile
GAT
[Ensembl]
¡û
>W1610718693
LLZH01000306
Actinomycetota
Actinoplanes awajinensis subsp. mycoplanecinus [LLZH]
118005
117929
-
Ile
GAT
[ENA]
¡û
>W1710502746
FMCR01000001
Actinomycetota
Micromonospora saelicesensis [FMCR]
1453898
1453822
-
Ile
GAT
[ENA]
¡û
>W1710561049
FONV01000017
Actinomycetota
Actinoplanes philippinensis [FONV]
173234
173158
-
Ile
GAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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