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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.162264 (47 seq.)
>W131204934
ATCI01000021
Bacteroidota
Capnocytophaga sp. oral taxon 336 oral taxon 336 str. F0502 [ATCI]
25003
25079
+
Arg
TCT
[ENA]
¡û
>W131164173
ARAI01000028
Bacteroidota
Capnocytophaga cynodegmi DSM 19736 [ARAI]
63193
63269
+
Arg
TCT
[ENA]
¡û
>WENV180698170
ODDE01059408
[ODDE] human metagenome; G_DNA_Supragingival plaque
205
279
+
Arg
TCT
[ENA]
¢þ
>WENV180726058
ODGS01019010
[ODGS] human metagenome; G_DNA_Attached/Keratinized gingiva
187
261
+
Arg
TCT
[ENA]
¢þ
>WENV180727415
ODGU01005027
[ODGU] human metagenome; G_DNA_Supragingival plaque
5305
5231
-
Arg
TCT
[ENA]
¢þ
>WENV180735857
ODHB01001125
[ODHB] human metagenome; G_DNA_Supragingival plaque
7510
7584
+
Arg
TCT
[ENA]
¢þ
>WENV180738544
ODHD01000080
[ODHD] human metagenome; G_DNA_Supragingival plaque
23514
23588
+
Arg
TCT
[ENA]
¢þ
>WENV180738587
ODHD01000128
[ODHD] human metagenome; G_DNA_Supragingival plaque
12043
11969
-
Arg
TCT
[ENA]
¢þ
>WENV180738700
ODHD01000333
[ODHD] human metagenome; G_DNA_Supragingival plaque
271
197
-
Arg
TCT
[ENA]
¢þ
>WENV180739451
ODHD01104518
[ODHD] human metagenome; G_DNA_Supragingival plaque
75
1
-
Arg
TCT
[ENA]
¢þ
>WENV180774910
ODIJ01110026
[ODIJ] human metagenome; G_DNA_Tongue dorsum
328
254
-
Arg
TCT
[ENA]
¢þ
>WENV180795658
ODJB01000109
[ODJB] human metagenome; G_DNA_Supragingival plaque
45984
45910
-
Arg
TCT
[ENA]
¢þ
>WENV180853303
ODKW01064057
[ODKW] human metagenome; G_DNA_Tongue dorsum
125
51
-
Arg
TCT
[ENA]
¢þ
>WENV180947978
ODUG01000139
[ODUG] human metagenome; G_DNA_Tongue dorsum
777
851
+
Arg
TCT
[ENA]
¢þ
>WENV180955407
ODUJ01112435
[ODUJ] human metagenome; G_DNA_Tongue dorsum
75
1
-
Arg
TCT
[ENA]
¢þ
>WENV180973999
ODUW01040088
[ODUW] human metagenome; G_DNA_Supragingival plaque
123
49
-
Arg
TCT
[ENA]
¢þ
>WENV180985001
ODVJ01000305
[ODVJ] human metagenome; G_DNA_Tongue dorsum
358
432
+
Arg
TCT
[ENA]
¢þ
>WENV181068124
ODZI01130230
[ODZI] human metagenome; G_DNA_Supragingival plaque
112
38
-
Arg
TCT
[ENA]
¢þ
>WENV181091430
OEBC01032668
[OEBC] human metagenome; G_DNA_Supragingival plaque
592
666
+
Arg
TCT
[ENA]
¢þ
>WENV181180146
OEJT01091516
[OEJT] human metagenome; G_DNA_Supragingival plaque
254
328
+
Arg
TCT
[ENA]
¢þ
>WENV181180417
OEJU01000060
[OEJU] human metagenome; G_DNA_Supragingival plaque
14746
14672
-
Arg
TCT
[ENA]
¢þ
>WENV181181515
OEJU01105526
[OEJU] human metagenome; G_DNA_Supragingival plaque
75
1
-
Arg
TCT
[ENA]
¢þ
>WENV170692999
LGOV01059278
[LGOV] marine sediment metagenome; sample #5579, elevator 3A push core 41 containing 12 cm of sediment, collected at Hydrate Ridge
46
120
+
Arg
TCT
[ENA]
¢þ
>C181063487
CP022378
Bacteroidota
Capnocytophaga cynodegmi G7591 [CP022378]
2546175
2546249
+
Arg
TCT
-
¡û
>C181063566
CP022380
Bacteroidota
Capnocytophaga sp. H4358 [CP022380]
1950327
1950401
+
Arg
TCT
-
¡û
>C181063613
CP022381
Bacteroidota
Capnocytophaga sp. H2931 [CP022381]
1955041
1955115
+
Arg
TCT
-
¡û
>C181063652
CP022382
Bacteroidota
Capnocytophaga canimorsus 7120 [CP022382]
530316
530390
+
Arg
TCT
-
¡û
>C181063898
CP022387
Bacteroidota
Capnocytophaga stomatis H2177 [CP022387]
2742914
2742988
+
Arg
TCT
-
¡û
>C181063925
CP022388
Bacteroidota
Capnocytophaga canimorsus H5594 [CP022388]
532610
532684
+
Arg
TCT
-
¡û
>C181063968
CP022389
Bacteroidota
Capnocytophaga canimorsus H3936 [CP022389]
503908
503982
+
Arg
TCT
-
¡û
>C191093543
CP032681
Bacteroidota
Capnocytophaga canimorsus RBWH [CP032681]
824122
824196
+
Arg
TCT
-
¡û
>C191213468
LR134513
Bacteroidota
Capnocytophaga canimorsus NCTC11921 [LR134513]
547411
547485
+
Arg
TCT
-
¡û
>W1911239230
NSDI01000001
Bacteroidota
Capnocytophaga canis 17-158 [NSDI]
301703
301629
-
Arg
TCT
[ENA]
¡û
>W1810101908
PGTV01000006
Bacteroidota
Capnocytophaga canimorsus DSM 19204 [PGTV]
40656
40730
+
Arg
TCT
[ENA]
¡û
>W1510076162
CDOD01000026
Bacteroidota
Capnocytophaga cynodegmi Ccyn2B [CDOD]
75243
75319
+
Arg
TCT
[ENA]
¡û
>W1510076174
CDOE01000011
Bacteroidota
Capnocytophaga canimorsus Cc12 [CDOE]
6637
6561
-
Arg
TCT
[ENA]
¡û
>W1510076246
CDOF01000079
Bacteroidota
Capnocytophaga cynodegmi Ccyn_ATCC49044 [CDOF]
2309
2233
-
Arg
TCT
[ENA]
¡û
>W1510076260
CDOG01000013
Bacteroidota
Capnocytophaga cynodegmi Ccy74 [CDOG]
63444
63520
+
Arg
TCT
[ENA]
¡û
>W1510076319
CDOH01000126
Bacteroidota
Capnocytophaga canis CcD95 [CDOH]
27895
27821
-
Arg
TCT
[ENA]
¡û
>W1510076337
CDOI01000057
Bacteroidota
Capnocytophaga canis CcD38 [CDOI]
20726
20652
-
Arg
TCT
[ENA]
¡û
>W1510076395
CDOJ01000100
Bacteroidota
Capnocytophaga canimorsus Cc2 [CDOJ]
10204
10280
+
Arg
TCT
[ENA]
¡û
>W1510076438
CDOK01000221
Bacteroidota
Capnocytophaga canimorsus Cc11 [CDOK]
1998
1922
-
Arg
TCT
[ENA]
¡û
>W1510076466
CDOL01000226
Bacteroidota
Capnocytophaga canis CcD93 [CDOL]
45489
45565
+
Arg
TCT
[ENA]
¡û
>C11104986
CP002113
Bacteroidota
Capnocytophaga canimorsus Cc5 [CP002113]
1451269
1451345
+
Arg
TCT
[Ensembl]
¡û
>W1511453355
JVFB01000036
Bacteroidota
Capnocytophaga ochracea 490_CAPN [JVFB]
23955
24031
+
Arg
TCT
[ENA]
¡û
>W11141864
AEOH01000012
Bacteroidota
Capnocytophaga ochracea F0287 [AEOH]
33621
33545
-
Arg
TCT
[ENA]
¡û
>W11163158
AFHP01000020
Bacteroidota
Capnocytophaga sp. oral taxon 329 oral taxon 329 str. F0087 [AFHP]
7707
7783
+
Arg
TCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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