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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.162266 (71 seq.)
>W1711117590
LUDH01000001
Bacteroidota
Riemerella anatipestifer [LUDH]
243480
243556
+
Met
CAT
[ENA]
¡û
>W1711118074
LUDU01000001
Bacteroidota
Riemerella anatipestifer [LUDU]
371961
371885
-
Met
CAT
[ENA]
¡û
>W1711505149
MKVF01000018
Bacteroidota
Flavobacteriia bacterium 40-80 [MKVF]
190953
191029
+
Met
CAT
[ENA]
¡û
>W1711505206
MKVG01000021
Bacteroidota
Flavobacterium sp. 38-13 [MKVG]
54222
54296
+
Met
CAT
[ENA]
¡û
>W1711713461
MTDC01000053
Bacteroidota
Flavobacterium covae columnare [MTDC]
6748
6824
+
Met
CAT
[ENA]
¡û
>W1711713489
MTDD01000003
Bacteroidota
Flavobacterium oreochromis columnare [MTDD]
72842
72766
-
Met
CAT
[ENA]
¡û
>W131099689
AOTS01000010
Bacteroidota
Flavobacterium sp. MS220-5C [AOTS]
2514
2438
-
Met
CAT
[ENA]
¡û
>W131236999
AUMT01000008
Bacteroidota
Chryseobacterium daeguense DSM 19388 [AUMT]
141729
141655
-
Met
CAT
[ENA]
¡û
>w013177
AANC01000012
Bacteroidota
Leeuwenhoekiella blandensis MED217 [AANC]
65964
66040
+
Met
CAT
[ENA]
¡û
>W141007833
AGYB01000010
Bacteroidota
Bergeyella zoohelcum CCUG 30536 [AGYB]
114191
114117
-
Met
CAT
[ENA]
¡û
>WENV180100567
OAOO01008417
[OAOO] marine metagenome; ENVO:00002010
367
293
-
Ile2
CAT
[ENA]
¢þ
>WENV180113522
OAPQ01141776
[OAPQ] marine metagenome; ENVO: 00002149
238
164
-
Ile2
CAT
[ENA]
¢þ
>WENV180209694
OBAL01013866
[OBAL] marine metagenome; ENVO:00002019, 'BRACKISH WATER
633
559
-
Ile2
CAT
[ENA]
¢þ
>WENV180214542
OBAP01010166
[OBAP] marine metagenome; ENVO:00002010 for 'seawater
87
13
-
Ile2
CAT
[ENA]
¢þ
>W141023465
AJXL01000038
Bacteroidota
Flavobacterium sp. ACAM 123 [AJXL]
33980
34054
+
Met
CAT
[ENA]
¡û
>WENV180374667
OBOK01005301
[OBOK] marine metagenome; seawater
660
586
-
Ile2
CAT
[ENA]
¢þ
>WENV180383512
OBOU01132031
[OBOU] marine metagenome; ENV:00002010
275
201
-
Ile2
CAT
[ENA]
¢þ
>W141079187
ATLH01000031
Bacteroidota
Cellulophaga baltica 13 [ATLH]
82268
82342
+
Met
CAT
[ENA]
¡û
>WENV181126096
OEFV01005464
[OEFV] marine metagenome; Particulate matter on a 0.22 Um pore size filter
1001
1075
+
Ile2
CAT
[ENA]
¢þ
>WENV181306759
OFIM01007190
[OFIM] marine metagenome; seawater
487
413
-
Ile2
CAT
[ENA]
¢þ
>WENV181309888
OFIY01001553
[OFIY] marine metagenome; sea ice
588
662
+
Ile2
CAT
[ENA]
¢þ
>WENV181325942
OFLJ01052745
[OFLJ] seawater metagenome; seawater
89
15
-
Ile2
CAT
[ENA]
¢þ
>WENV181385613
OFRJ01001117
[OFRJ] marine metagenome; seawater
454
380
-
Ile2
CAT
[ENA]
¢þ
>W141168442
AXUZ01000016
Bacteroidota
Chryseobacterium sp. UNC8MFCol [AXUZ]
86747
86821
+
Met
CAT
[ENA]
¡û
>WENV182587671
OJHN01001322
[OJHN] seawater metagenome; Sea water
1216
1290
+
Ile2
CAT
[ENA]
¢þ
>WENV183619814
OOFQ01054785
[OOFQ] marine metagenome; seawater
451
525
+
Ile2
CAT
[ENA]
¢þ
>WENV170283413
CERU01008990
[CERU] marine metagenome genome assembly TARA_065_DCM_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
41660
41736
+
Met
CAT
[ENA]
¢þ
>WENV170569193
FLMP01143288
[FLMP] seawater metagenome; seawater
436
512
+
Met
CAT
[ENA]
¢þ
>WENV170594173
FUFK011207433
[FUFK] metagenome; unknown
399
325
-
Met
CAT
[ENA]
¢þ
>WENV170696111
LGVE01223552
[LGVE] marine sediment metagenome; combined push core samples #3730, #5133, and #5579 collected at Hydrate Ridge
540
464
-
Met
CAT
[ENA]
¢þ
>WENV170698155
LGVF01274341
[LGVF] marine sediment metagenome; combined push core samples #3730, #5133, and #5579 collected at Hydrate Ridge
6666
6590
-
Met
CAT
[ENA]
¢þ
>WENV170708928
LNFM01000033
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
237748
237824
+
Met
CAT
[ENA]
¢þ
>WENV170941269
MDTG01357525
[MDTG] marine metagenome; seawater
7598
7672
+
Met
CAT
[ENA]
¢þ
>C181063661
CP022382
Bacteroidota
Capnocytophaga canimorsus 7120 [CP022382]
2028899
2028973
+
Met
CAT
-
¡û
>C181063933
CP022388
Bacteroidota
Capnocytophaga canimorsus H5594 [CP022388]
2043857
2043931
+
Met
CAT
-
¡û
>C181063977
CP022389
Bacteroidota
Capnocytophaga canimorsus H3936 [CP022389]
2038305
2038379
+
Met
CAT
-
¡û
>C191093552
CP032681
Bacteroidota
Capnocytophaga canimorsus RBWH [CP032681]
2383641
2383715
+
Met
CAT
-
¡û
>C191115331
CP033917
Bacteroidota
Chryseobacterium sp. G0201 [CP033917]
2283001
2283075
+
Met
CAT
-
¡û
>C191116099
CP033928
Bacteroidota
Chryseobacterium indoltheticum G0211 [CP033928]
2062442
2062368
-
Met
CAT
-
¡û
>C191132755
CP034930
Bacteroidota
Apibacter raozihei HY041 [CP034930]
2971045
2971119
+
Met
CAT
-
¡û
>C191213476
LR134513
Bacteroidota
Capnocytophaga canimorsus NCTC11921 [LR134513]
2069043
2069117
+
Met
CAT
-
¡û
>W141809184
JPRH01000005
Bacteroidota
Chryseobacterium soli [JPRH]
163468
163394
-
Met
CAT
[ENA]
¡û
>W141820201
JQMS01000001
Bacteroidota
Flavobacterium sp. 83 [JQMS]
1309206
1309282
+
Met
CAT
[ENA]
¡û
>C141012323
HE774682
Bacteroidota
Flavobacterium indicum GPTSA100-9 = DSM 17447 [HE774682]
2736163
2736239
+
Met
CAT
-
¡û
>W1910785542
MQUA01000013
Bacteroidota
Polaribacter filamentus ATCC 700397 [MQUA]
3131085
3131011
-
Met
CAT
[ENA]
¡û
>W1910796624
MSCM01000002
Bacteroidota
Polaribacter glomeratus ATCC 43844 [MSCM]
803655
803729
+
Met
CAT
[ENA]
¡û
>W1910808978
MUGU01000024
Bacteroidota
Flavobacterium columnare NBRC 100251 = ATCC 23463 [MUGU]
88195
88121
-
Met
CAT
[ENA]
¡û
>W1911501436
OENF01000038
Bacteroidota
Tenacibaculum piscium TNO020 [OENF]
166383
166457
+
Met
CAT
[ENA]
¡û
>W1911708377
QOVK01000001
Bacteroidota
Leeuwenhoekiella polynyae LMG 29608 [QOVK]
521472
521546
+
Met
CAT
[ENA]
¡û
>W1810101913
PGTV01000010
Bacteroidota
Capnocytophaga canimorsus DSM 19204 [PGTV]
54725
54799
+
Met
CAT
[ENA]
¡û
>W1810173545
PJND01000007
Bacteroidota
Flavobacterium lindanitolerans IP-10 [PJND]
855751
855825
+
Met
CAT
[ENA]
¡û
>W1810707231
QNFY01000015
Bacteroidota
Chryseobacterium lathyri KCTC 22544 [QNFY]
84825
84899
+
Met
CAT
[ENA]
¡û
>C151016375
CP007035
Bacteroidota
Niabella soli DSM 19437 JS13-8; DSM 19437 [CP007035]
2778313
2778387
+
Met
CAT
[Ensembl]
¡û
>W1510076186
CDOE01000055
Bacteroidota
Capnocytophaga canimorsus Cc12 [CDOE]
3339
3415
+
Met
CAT
[ENA]
¡û
>W1510076422
CDOK01000142
Bacteroidota
Capnocytophaga canimorsus Cc11 [CDOK]
253
177
-
Met
CAT
[ENA]
¡û
>C11104967
CP002113
Bacteroidota
Capnocytophaga canimorsus Cc5 [CP002113]
437286
437362
+
Met
CAT
[Ensembl]
¡û
>W1511432210
JUGI01000020
Bacteroidota
Chryseobacterium sp. YR459 [JUGI]
90736
90812
+
Met
CAT
[ENA]
¡û
>W1511526847
JYGZ01000005
Bacteroidota
Flavobacterium sp. 316 [JYGZ]
324858
324934
+
Met
CAT
[ENA]
¡û
>C161095467
CP016277
Bacteroidota
Flavobacterium columnare Pf1 [CP016277]
352579
352655
+
Met
CAT
-
¡û
>W121086479
AKJY01000063
Bacteroidota
Chryseobacterium populi CF314 [AKJY]
39459
39535
+
Met
CAT
[ENA]
¡û
>W1610535013
JRLV01000008
Bacteroidota
Flavobacterium beibuense F44-8 [JRLV]
154131
154055
-
Met
CAT
[ENA]
¡û
>W1610928949
LUDH01000001
Bacteroidota
Riemerella anatipestifer [LUDH]
243480
243556
+
Met
CAT
[ENA]
¡û
>W1610929433
LUDU01000001
Bacteroidota
Riemerella anatipestifer [LUDU]
371961
371885
-
Met
CAT
[ENA]
¡û
>W1710557227
FOKU01000001
Bacteroidota
Allomuricauda taeanensis antarctica [FOKU]
536629
536555
-
Met
CAT
[ENA]
¡û
>W1710587115
FQXT01000002
Bacteroidota
Leeuwenhoekiella palythoae [FQXT]
293734
293810
+
Met
CAT
[ENA]
¡û
>W1710587922
FQYX01000034
Bacteroidota
Arenibacter nanhaiticus [FQYX]
36045
36121
+
Met
CAT
[ENA]
¡û
>W1710589887
FRAM01000004
Bacteroidota
Epilithonimonas mollis molle [FRAM]
217536
217460
-
Met
CAT
[ENA]
¡û
>W1710596329
FTMM01000012
Bacteroidota
Chryseobacterium sp. RU37D [FTMM]
14045
13971
-
Met
CAT
[ENA]
¡û
>W1710600202
FTPU01000070
Bacteroidota
Epilithonimonas bovis DSM 19482 [FTPU]
1571
1495
-
Met
CAT
[ENA]
¡û
>W1710606046
FWXM01000005
Bacteroidota
Chryseobacterium sp. YR221 [FWXM]
317259
317183
-
Met
CAT
[ENA]
¡û
>W1710637249
JRLV01000008
Bacteroidota
Flavobacterium beibuense F44-8 [JRLV]
154131
154055
-
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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