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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.162294 (128 seq.)
>W1710874407
LMNO01000005
Actinomycetota
Rathayibacter sp. Leaf294 [LMNO]
318774
318700
-
Met
CAT
[ENA]
¡û
>W1710874508
LMNR01000001
Actinomycetota
Rathayibacter sp. Leaf296 [LMNR]
1569630
1569704
+
Met
CAT
[ENA]
¡û
>W1710874619
LMNT01000003
Actinomycetota
Rathayibacter sp. Leaf299 [LMNT]
485825
485749
-
Met
CAT
[ENA]
¡û
>W1710876871
LMPP01000004
Actinomycetota
Rathayibacter sp. Leaf185 [LMPP]
318774
318700
-
Met
CAT
[ENA]
¡û
>W131224984
AUDF01000003
Actinomycetota
Rathayibacter toxicus DSM 7488 [AUDF]
4675
4749
+
Met
CAT
[ENA]
¡û
>W1711747206
MUKN01000018
Actinomycetota
Rathayibacter sp. VKM Ac-2630 [MUKN]
15435
15509
+
Met
CAT
[ENA]
¡û
>WENV181835747
OGVI01015615
[OGVI] freshwater metagenome; freshwater
504
578
+
Ile2
CAT
[ENA]
¢þ
>C191056231
CP028129
Actinomycetota
Rathayibacter rathayi DSM 7485 [CP028129]
1480650
1480576
-
Met
CAT
-
¡û
>C191056277
CP028130
Actinomycetota
Rathayibacter iranicus NCCPB 2253 [CP028130]
1212826
1212752
-
Met
CAT
-
¡û
>C191056505
CP028137
Actinomycetota
Rathayibacter festucae DSM 15932 [CP028137]
896788
896862
+
Met
CAT
-
¡û
>W1911497476
OCNL01000002
Actinomycetota
Rathayibacter rathayi VKM Ac-1601 [OCNL]
48437
48511
+
Met
CAT
[ENA]
¡û
>W1810276961
PSTL01000001
Actinomycetota
Rathayibacter sp. AY1A7 [PSTL]
421943
422017
+
Met
CAT
[ENA]
¡û
>W1810277037
PSTM01000020
Actinomycetota
Rathayibacter sp. AY1A5 [PSTM]
17856
17930
+
Met
CAT
[ENA]
¡û
>W1810277074
PSTN01000017
Actinomycetota
Rathayibacter sp. AY1A4 [PSTN]
35739
35813
+
Met
CAT
[ENA]
¡û
>W1810277114
PSTO01000012
Actinomycetota
Rathayibacter sp. AY1A3 [PSTO]
59245
59171
-
Met
CAT
[ENA]
¡û
>W1810277167
PSTP01000015
Actinomycetota
Rathayibacter sp. AY1A2 [PSTP]
42765
42691
-
Met
CAT
[ENA]
¡û
>W1810277714
PSUB01000017
Actinomycetota
Rathayibacter sp. AY2B9 [PSUB]
42310
42236
-
Met
CAT
[ENA]
¡û
>W1810277732
PSUC01000012
Actinomycetota
Rathayibacter sp. AY2B7 [PSUC]
22696
22620
-
Met
CAT
[ENA]
¡û
>W1810277771
PSUD01000004
Actinomycetota
Rathayibacter rathayi AY2B6 [PSUD]
84879
84953
+
Met
CAT
[ENA]
¡û
>W1810277826
PSUE01000010
Actinomycetota
Rathayibacter sp. AY2B5 [PSUE]
58414
58488
+
Met
CAT
[ENA]
¡û
>W1810277852
PSUF01000001
Actinomycetota
Rathayibacter rathayi AY2B4 [PSUF]
47700
47626
-
Met
CAT
[ENA]
¡û
>W1810277914
PSUG01000020
Actinomycetota
Rathayibacter sp. AY2B3 [PSUG]
2464
2538
+
Met
CAT
[ENA]
¡û
>W1810277948
PSUH01000015
Actinomycetota
Rathayibacter sp. AY2B1 [PSUH]
33615
33541
-
Met
CAT
[ENA]
¡û
>W1810277985
PSUI01000004
Actinomycetota
Rathayibacter rathayi AY2A9 [PSUI]
47462
47388
-
Met
CAT
[ENA]
¡û
>W1810278022
PSUJ01000004
Actinomycetota
Rathayibacter rathayi AY2A5 [PSUJ]
97518
97592
+
Met
CAT
[ENA]
¡û
>W1810278064
PSUK01000003
Actinomycetota
Rathayibacter rathayi AY2A3 [PSUK]
74902
74828
-
Met
CAT
[ENA]
¡û
>W1810278119
PSUL01000006
Actinomycetota
Rathayibacter rathayi AY1I9 [PSUL]
47345
47271
-
Met
CAT
[ENA]
¡û
>W1810278171
PSUM01000018
Actinomycetota
Rathayibacter tritici ATCC 11402 [PSUM]
43142
43068
-
Met
CAT
[ENA]
¡û
>W1810278216
PSUN01000009
Actinomycetota
Rathayibacter tritici GSPB 2752 [PSUN]
56363
56437
+
Met
CAT
[ENA]
¡û
>W1810278235
PSUO01000001
Actinomycetota
Rathayibacter tritici GSPB 2748 [PSUO]
88936
88862
-
Met
CAT
[ENA]
¡û
>W1810278279
PSUP01000002
Actinomycetota
Rathayibacter rathayi ICMP 2576 [PSUP]
74880
74806
-
Met
CAT
[ENA]
¡û
>W1810278323
PSUQ01000003
Actinomycetota
Rathayibacter rathayi ICMP 2572 [PSUQ]
96943
97017
+
Met
CAT
[ENA]
¡û
>W1810278363
PSUR01000001
Actinomycetota
Rathayibacter rathayi AY1H7 [PSUR]
109901
109827
-
Met
CAT
[ENA]
¡û
>W1810278407
PSUS01000001
Actinomycetota
Rathayibacter rathayi AY1H6 [PSUS]
47469
47395
-
Met
CAT
[ENA]
¡û
>W1810278450
PSUT01000001
Actinomycetota
Rathayibacter rathayi AY1H5 [PSUT]
333864
333938
+
Met
CAT
[ENA]
¡û
>W1810278510
PSUU01000020
Actinomycetota
Rathayibacter sp. AY1H3 [PSUU]
34217
34291
+
Met
CAT
[ENA]
¡û
>W1810278562
PSUV01000012
Actinomycetota
Rathayibacter sp. AY1H2 [PSUV]
57341
57415
+
Met
CAT
[ENA]
¡û
>W1810278611
PSUW01000014
Actinomycetota
Rathayibacter sp. AY1G9 [PSUW]
34013
34087
+
Met
CAT
[ENA]
¡û
>W1810278634
PSUX01000008
Actinomycetota
Rathayibacter rathayi AY1G7 [PSUX]
47430
47356
-
Met
CAT
[ENA]
¡û
>W1810278678
PSUY01000004
Actinomycetota
Rathayibacter rathayi AY1G4 [PSUY]
47557
47483
-
Met
CAT
[ENA]
¡û
>W1810278733
PSUZ01000011
Actinomycetota
Rathayibacter sp. AY1G1 [PSUZ]
58682
58756
+
Met
CAT
[ENA]
¡û
>W1810278782
PSVA01000016
Actinomycetota
Rathayibacter sp. AY1F9 [PSVA]
34173
34247
+
Met
CAT
[ENA]
¡û
>W1810278823
PSVB01000010
Actinomycetota
Rathayibacter sp. AY1F8 [PSVB]
59004
58930
-
Met
CAT
[ENA]
¡û
>W1810278860
PSVC01000009
Actinomycetota
Rathayibacter sp. AY1F7 [PSVC]
58747
58821
+
Met
CAT
[ENA]
¡û
>W1810278884
PSVD01000001
Actinomycetota
Rathayibacter sp. AY1F6 [PSVD]
59237
59163
-
Met
CAT
[ENA]
¡û
>W1810278961
PSVE01000015
Actinomycetota
Rathayibacter sp. AY1F4 [PSVE]
32867
32941
+
Met
CAT
[ENA]
¡û
>W1810278985
PSVF01000012
Actinomycetota
Rathayibacter sp. AY1F3 [PSVF]
42245
42171
-
Met
CAT
[ENA]
¡û
>W1810279047
PSVG01000017
Actinomycetota
Rathayibacter sp. AY1F2 [PSVG]
34193
34267
+
Met
CAT
[ENA]
¡û
>W1810279075
PSVH01000013
Actinomycetota
Rathayibacter sp. AY1E9 [PSVH]
34047
34121
+
Met
CAT
[ENA]
¡û
>W1810279113
PSVI01000009
Actinomycetota
Rathayibacter sp. AY1E8 [PSVI]
42880
42806
-
Met
CAT
[ENA]
¡û
>W1810279147
PSVJ01000004
Actinomycetota
Rathayibacter rathayi AY1E7 [PSVJ]
109998
109924
-
Met
CAT
[ENA]
¡û
>W1810279205
PSVK01000011
Actinomycetota
Rathayibacter sp. AY1E6 [PSVK]
59214
59140
-
Met
CAT
[ENA]
¡û
>W1810279251
PSVL01000017
Actinomycetota
Rathayibacter sp. AY1E5 [PSVL]
43082
43008
-
Met
CAT
[ENA]
¡û
>W1810279288
PSVM01000011
Actinomycetota
Rathayibacter sp. AY1E4 [PSVM]
59233
59159
-
Met
CAT
[ENA]
¡û
>W1810279346
PSVN01000012
Actinomycetota
Rathayibacter sp. AY1E3 [PSVN]
33741
33815
+
Met
CAT
[ENA]
¡û
>W1810279355
PSVO01000001
Actinomycetota
Rathayibacter sp. AY1E2 [PSVO]
421119
421045
-
Met
CAT
[ENA]
¡û
>W1810279407
PSVP01000018
Actinomycetota
Rathayibacter sp. AY1E1 [PSVP]
38675
38749
+
Met
CAT
[ENA]
¡û
>W1810279472
PSVQ01000019
Actinomycetota
Rathayibacter sp. AY1D9 [PSVQ]
17474
17548
+
Met
CAT
[ENA]
¡û
>W1810279492
PSVR01000007
Actinomycetota
Rathayibacter rathayi AY1D8 [PSVR]
64571
64645
+
Met
CAT
[ENA]
¡û
>W1810279556
PSVS01000058
Actinomycetota
Rathayibacter sp. AY1D7 [PSVS]
17735
17809
+
Met
CAT
[ENA]
¡û
>W1810279572
PSVT01000004
Actinomycetota
Rathayibacter rathayi AY1D6 [PSVT]
47409
47335
-
Met
CAT
[ENA]
¡û
>W1810279612
PSVU01000001
Actinomycetota
Rathayibacter sp. AY1D5 [PSVU]
143827
143901
+
Met
CAT
[ENA]
¡û
>W1810279672
PSVV01000008
Actinomycetota
Rathayibacter sp. AY1D4 [PSVV]
57508
57582
+
Met
CAT
[ENA]
¡û
>W1810279731
PSVW01000014
Actinomycetota
Rathayibacter sp. AY1D3 [PSVW]
34070
34144
+
Met
CAT
[ENA]
¡û
>W1810279749
PSVX01000015
Actinomycetota
Rathayibacter sp. AY1D2 [PSVX]
42805
42731
-
Met
CAT
[ENA]
¡û
>W1810279819
PSVY01000021
Actinomycetota
Rathayibacter sp. AY1D1 [PSVY]
17894
17968
+
Met
CAT
[ENA]
¡û
>W1810279859
PSVZ01000013
Actinomycetota
Rathayibacter sp. AY1C9 [PSVZ]
58862
58788
-
Met
CAT
[ENA]
¡û
>W1810279878
PSWA01000002
Actinomycetota
Rathayibacter rathayi AY1C8 [PSWA]
47406
47332
-
Met
CAT
[ENA]
¡û
>W1810279944
PSWB01000019
Actinomycetota
Rathayibacter sp. AY1C7 [PSWB]
42847
42773
-
Met
CAT
[ENA]
¡û
>W1810279984
PSWC01000018
Actinomycetota
Rathayibacter sp. AY1C6 [PSWC]
37603
37677
+
Met
CAT
[ENA]
¡û
>W1810280028
PSWD01000009
Actinomycetota
Rathayibacter sp. AY1C5 [PSWD]
34132
34206
+
Met
CAT
[ENA]
¡û
>W1810280073
PSWE01000018
Actinomycetota
Rathayibacter sp. AY1C4 [PSWE]
42859
42785
-
Met
CAT
[ENA]
¡û
>W1810280122
PSWF01000030
Actinomycetota
Rathayibacter sp. AY1C3 [PSWF]
43092
43018
-
Met
CAT
[ENA]
¡û
>W1810280163
PSWG01000020
Actinomycetota
Rathayibacter sp. AY1C2 [PSWG]
17781
17855
+
Met
CAT
[ENA]
¡û
>W1810280200
PSWH01000015
Actinomycetota
Rathayibacter sp. AY1C1 [PSWH]
37562
37636
+
Met
CAT
[ENA]
¡û
>W1810280223
PSWI01000003
Actinomycetota
Rathayibacter rathayi AY1B9 [PSWI]
84874
84948
+
Met
CAT
[ENA]
¡û
>W1810280286
PSWJ01000010
Actinomycetota
Rathayibacter sp. AY1B8 [PSWJ]
42751
42677
-
Met
CAT
[ENA]
¡û
>W1810280324
PSWK01000017
Actinomycetota
Rathayibacter sp. AY1B7 [PSWK]
42754
42680
-
Met
CAT
[ENA]
¡û
>W1810280368
PSWL01000014
Actinomycetota
Rathayibacter sp. AY1B6 [PSWL]
57360
57286
-
Met
CAT
[ENA]
¡û
>W1810280415
PSWM01000012
Actinomycetota
Rathayibacter sp. AY1B5 [PSWM]
43083
43157
+
Met
CAT
[ENA]
¡û
>W1810280429
PSWN01000001
Actinomycetota
Rathayibacter sp. AY1B4 [PSWN]
36740
36814
+
Met
CAT
[ENA]
¡û
>W1810280489
PSWO01000008
Actinomycetota
Rathayibacter sp. AY1B1 [PSWO]
36553
36627
+
Met
CAT
[ENA]
¡û
>W1810280515
PSWP01000002
Actinomycetota
Rathayibacter rathayi AY1A8 [PSWP]
97496
97570
+
Met
CAT
[ENA]
¡û
>W1810280575
PSWQ01000021
Actinomycetota
Rathayibacter sp. RFBD1 [PSWQ]
149874
149950
+
Met
CAT
[ENA]
¡û
>W1810280630
PSWR01000101
Actinomycetota
Rathayibacter sp. TRS19 [PSWR]
2464
2540
+
Met
CAT
[ENA]
¡û
>W1810280673
PSWS01000056
Actinomycetota
Rathayibacter tritici DSM 7486 [PSWS]
6515
6589
+
Met
CAT
[ENA]
¡û
>W1810280716
PSWT01000050
Actinomycetota
Rathayibacter tritici ICMP 2628 [PSWT]
51201
51275
+
Met
CAT
[ENA]
¡û
>W1810280772
PSWU01000007
Actinomycetota
Rathayibacter toxicus FH99 [PSWU]
150632
150706
+
Met
CAT
[ENA]
¡û
>W1810280815
PSWV01000008
Actinomycetota
Rathayibacter toxicus FH89 [PSWV]
150684
150758
+
Met
CAT
[ENA]
¡û
>W1810280858
PSWW01000008
Actinomycetota
Rathayibacter toxicus FH86 [PSWW]
150684
150758
+
Met
CAT
[ENA]
¡û
>W1810280901
PSWX01000007
Actinomycetota
Rathayibacter toxicus FH85 [PSWX]
150632
150706
+
Met
CAT
[ENA]
¡û
>W1810280944
PSWY01000008
Actinomycetota
Rathayibacter toxicus FH82 [PSWY]
150684
150758
+
Met
CAT
[ENA]
¡û
>W1810280987
PSWZ01000007
Actinomycetota
Rathayibacter toxicus FH81 [PSWZ]
150684
150758
+
Met
CAT
[ENA]
¡û
>W1810281030
PSXA01000006
Actinomycetota
Rathayibacter toxicus FH78 [PSXA]
150632
150706
+
Met
CAT
[ENA]
¡û
>W1810281073
PSXB01000006
Actinomycetota
Rathayibacter toxicus FH183 [PSXB]
150632
150706
+
Met
CAT
[ENA]
¡û
>W1810281128
PSXC01000009
Actinomycetota
Rathayibacter toxicus FH149 [PSXC]
150685
150759
+
Met
CAT
[ENA]
¡û
>W1810281171
PSXD01000007
Actinomycetota
Rathayibacter toxicus FH147 [PSXD]
150632
150706
+
Met
CAT
[ENA]
¡û
>W1810281214
PSXE01000009
Actinomycetota
Rathayibacter toxicus FH146 [PSXE]
150694
150768
+
Met
CAT
[ENA]
¡û
>W1810281257
PSXF01000007
Actinomycetota
Rathayibacter toxicus FH145 [PSXF]
150684
150758
+
Met
CAT
[ENA]
¡û
>W1810281300
PSXG01000007
Actinomycetota
Rathayibacter toxicus FH142 [PSXG]
150774
150848
+
Met
CAT
[ENA]
¡û
>W1810281343
PSXH01000008
Actinomycetota
Rathayibacter toxicus FH141 [PSXH]
150631
150705
+
Met
CAT
[ENA]
¡û
>W1810281386
PSXI01000008
Actinomycetota
Rathayibacter toxicus FH140 [PSXI]
150774
150848
+
Met
CAT
[ENA]
¡û
>W1810281430
PSXJ01000009
Actinomycetota
Rathayibacter toxicus FH139 [PSXJ]
150774
150848
+
Met
CAT
[ENA]
¡û
>W1810281473
PSXK01000009
Actinomycetota
Rathayibacter toxicus FH138 [PSXK]
150683
150757
+
Met
CAT
[ENA]
¡û
>W1810281516
PSXL01000007
Actinomycetota
Rathayibacter toxicus FH137 [PSXL]
150632
150706
+
Met
CAT
[ENA]
¡û
>W1810281559
PSXM01000008
Actinomycetota
Rathayibacter toxicus FH128 [PSXM]
150758
150832
+
Met
CAT
[ENA]
¡û
>W1810281602
PSXN01000009
Actinomycetota
Rathayibacter toxicus FH100 [PSXN]
150647
150721
+
Met
CAT
[ENA]
¡û
>W1810281650
PSXO01000060
Actinomycetota
Rathayibacter rathayi Z022 [PSXO]
36228
36154
-
Met
CAT
[ENA]
¡û
>W1810281693
PSXP01000028
Actinomycetota
Rathayibacter rathayi Z015 [PSXP]
47380
47306
-
Met
CAT
[ENA]
¡û
>W1810281736
PSXQ01000028
Actinomycetota
Rathayibacter rathayi Z007 [PSXQ]
47724
47650
-
Met
CAT
[ENA]
¡û
>W1810281779
PSXR01000065
Actinomycetota
Rathayibacter rathayi CS6 [PSXR]
47445
47371
-
Met
CAT
[ENA]
¡û
>W1810281816
PSXS01000021
Actinomycetota
Rathayibacter iranicus DSM 7484 [PSXS]
174721
174647
-
Met
CAT
[ENA]
¡û
>W1810281857
PSXT01000023
Actinomycetota
Rathayibacter iranicus TRS5 [PSXT]
179592
179666
+
Met
CAT
[ENA]
¡û
>W1810281904
PSXU01000027
Actinomycetota
Rathayibacter iranicus FH154 [PSXU]
174719
174645
-
Met
CAT
[ENA]
¡û
>W1810281940
PSXV01000013
Actinomycetota
Rathayibacter sp. AY1A1 [PSXV]
34008
34082
+
Met
CAT
[ENA]
¡û
>W1810452315
PZPL01000001
Actinomycetota
Rathayibacter caricis DSM 15933 [PZPL]
2766724
2766800
+
Met
CAT
[ENA]
¡û
>W1810595362
QGDV01000002
Actinomycetota
Rathayibacter iranicus VKM Ac-1602 [QGDV]
6513
6587
+
Met
CAT
[ENA]
¡û
>C151073240
CP010848
Actinomycetota
Rathayibacter toxicus 70137 [CP010848]
1179147
1179221
+
Met
CAT
[Ensembl]
¡û
>W1511589872
LBFI01000053
Actinomycetota
Rathayibacter toxicus FH142 [LBFI]
227898
227824
-
Met
CAT
[ENA]
¡û
>C161055026
CP013292
Actinomycetota
Rathayibacter toxicus WAC3373 [CP013292]
245217
245143
-
Met
CAT
-
¡û
>C161089167
CP015515
Actinomycetota
Rathayibacter tritici NCPPB 1953 [CP015515]
1779090
1779016
-
Met
CAT
[Ensembl]
¡û
>W1610630616
LIIN01000055
Actinomycetota
Rathayibacter tanaceti [LIIN]
15245
15171
-
Met
CAT
[ENA]
¡û
>W1610736753
LMNO01000005
Actinomycetota
Rathayibacter sp. Leaf294 [LMNO]
318774
318700
-
Met
CAT
[ENA]
¡û
>W1610736854
LMNR01000001
Actinomycetota
Rathayibacter sp. Leaf296 [LMNR]
1569630
1569704
+
Met
CAT
[ENA]
¡û
>W1610736965
LMNT01000003
Actinomycetota
Rathayibacter sp. Leaf299 [LMNT]
485825
485749
-
Met
CAT
[ENA]
¡û
>W1610739217
LMPP01000004
Actinomycetota
Rathayibacter sp. Leaf185 [LMPP]
318774
318700
-
Met
CAT
[ENA]
¡û
>W1710608932
FXBM01000001
Actinomycetota
Rathayibacter oskolensis VKM Ac-2121 [FXBM]
1222709
1222783
+
Met
CAT
[ENA]
¡û
>W1710761755
LIIN01000055
Actinomycetota
Rathayibacter tanaceti [LIIN]
15245
15171
-
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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