This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.162357 (58 seq.)
>W1710861484
LMDQ01000014
Betaproteobacteria
Acidovorax sp. Root402 [LMDQ]
598215
598139
-
Pro
TGG
[ENA]
¡û
>W1710867575
LMIJ01000047
Betaproteobacteria
Acidovorax sp. Root219 [LMIJ]
33187
33263
+
Pro
TGG
[ENA]
¡û
>W1710872402
LMLY01000026
Betaproteobacteria
Acidovorax sp. Leaf76 [LMLY]
78479
78555
+
Pro
TGG
[ENA]
¡û
>W1711394799
MERS01000003
Betaproteobacteria
Burkholderiales bacterium GWE1_65_30 [MERS]
83623
83699
+
Pro
TGG
[ENA]
¡û
>W1711575559
MNIU01000020
Betaproteobacteria
Delftia sp. 13_1_20CM_4_67_18 [MNIU]
211557
211633
+
Pro
TGG
[ENA]
¡û
>W1711956572
NBTL01000001
Betaproteobacteria
Achromobacter xylosoxidans [NBTL]
2322256
2322332
+
Pro
TGG
[ENA]
¡û
>W131104548
APCR01000425
Betaproteobacteria
Comamonas sp. B-9 [APCR]
13507
13431
-
Pro
TGG
[ENA]
¡û
>C026313
CP000542
Betaproteobacteria
Verminephrobacter eiseniae EF01-2 [CP000542]
2015085
2015009
-
Pro
TGG
[Ensembl]
¡û
>WENV181322657
OFKT01010660
[OFKT] marine metagenome; sea ice
357
433
+
Pro
TGG
[ENA]
¢þ
>WENV170708748
LNAQ01000477
[LNAQ] soil metagenome; soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
5480
5404
-
Pro
TGG
[ENA]
¢þ
>WENV170711043
LNFM01003361
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
26916
26992
+
Pro
TGG
[ENA]
¢þ
>WENV170711209
LNFM01004020
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
27128
27052
-
Pro
TGG
[ENA]
¢þ
>WENV170713245
LNFM01026900
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
12
88
+
Pro
TGG
[ENA]
¢þ
>WENV170716436
LSQA01002832
[LSQA] termite gut metagenome; viral DNA filtered from gut of termites from termite colony 3
272
194
-
Pro
TGG
[ENA]
¢þ
>WENV170784650
MCNF01000482
[MCNF] bioreactor metagenome; arboretum soil enriched with benzalkonium chloride
821
745
-
Pro
TGG
[ENA]
¢þ
>C181088994
CP023687
Betaproteobacteria
Paracidovorax citrulli KACC17005 [CP023687]
1986717
1986641
-
Pro
TGG
-
¡û
>C191124964
CP034433
Betaproteobacteria
Iodobacter ciconiae H11R3 [CP034433]
3555828
3555752
-
Pro
TGG
-
¡û
>C191124969
CP034433
Betaproteobacteria
Iodobacter ciconiae H11R3 [CP034433]
3326954
3326878
-
Pro
TGG
-
¡û
>W09106025
AASQ01000001
Betaproteobacteria
Verminephrobacter eiseniae EF01-2 [AASQ]
187536
187460
-
Pro
TGG
[ENA]
¡û
>W1810068062
PDZG01000040
Betaproteobacteria
Iodobacter sp. BJB302 [PDZG]
9106
9182
+
Pro
TGG
[ENA]
¡û
>W1810068074
PDZG01000073
Betaproteobacteria
Iodobacter sp. BJB302 [PDZG]
11092
11168
+
Pro
TGG
[ENA]
¡û
>W1810573526
QEKU01000001
Betaproteobacteria
Acidovorax sp. 99 [QEKU]
4872587
4872511
-
Pro
TGG
[ENA]
¡û
>W1810580626
QETI01000005
Betaproteobacteria
Comamonas sp. JNW [QETI]
204889
204813
-
Pro
TGG
[ENA]
¡û
>W1810580627
QETI01000005
Betaproteobacteria
Comamonas sp. JNW [QETI]
178967
178891
-
Pro
TGG
[ENA]
¡û
>W1810609625
QGUB01000001
Betaproteobacteria
Melaminivora alkalimesophila DSM 26006 [QGUB]
633155
633231
+
Pro
TGG
[ENA]
¡û
>W1810677453
QKMS01000004
Betaproteobacteria
Acidovorax sp. OV235 [QKMS]
36897
36973
+
Pro
TGG
[ENA]
¡û
>C151025446
CP007495
Betaproteobacteria
Bordetella holmesii 44057 [CP007495]
2922394
2922470
+
Pro
TGG
[Ensembl]
¡û
>W1510019800
BBXH01000011
Betaproteobacteria
Comamonas sp. E6 [BBXH]
186303
186227
-
Pro
TGG
[ENA]
¡û
>W1510019822
BBXH01000034
Betaproteobacteria
Comamonas sp. E6 [BBXH]
24536
24612
+
Pro
TGG
[ENA]
¡û
>C10104233
CP001220
Betaproteobacteria
Comamonas thiooxydans CNB-1 [CP001220]
1908322
1908246
-
Pro
TGG
[Ensembl]
¡û
>C10104234
CP001220
Betaproteobacteria
Comamonas thiooxydans CNB-1 [CP001220]
1753122
1753046
-
Pro
TGG
[Ensembl]
¡û
>W1511481643
JWJW01000012
Betaproteobacteria
Comamonas thiooxydans R17B [JWJW]
13369
13293
-
Pro
TGG
[ENA]
¡û
>W1511481659
JWJW01000019
Betaproteobacteria
Comamonas thiooxydans R17B [JWJW]
117581
117657
+
Pro
TGG
[ENA]
¡û
>W1511552247
JZUG01000015
Betaproteobacteria
Janthinobacterium sp. B9-8 [JZUG]
147974
147898
-
Pro
TGG
[ENA]
¡û
>W1511552249
JZUG01000015
Betaproteobacteria
Janthinobacterium sp. B9-8 [JZUG]
37657
37581
-
Pro
TGG
[ENA]
¡û
>W11156561
AFBG01000022
Betaproteobacteria
Acidovorax radicis N35 [AFBG]
169129
169053
-
Pro
TGG
[ENA]
¡û
>C161068548
CP014222
Betaproteobacteria
Janthinobacterium sp. B9-8 [CP014222]
3244989
3245065
+
Pro
TGG
[Ensembl]
¡û
>C161068550
CP014222
Betaproteobacteria
Janthinobacterium sp. B9-8 [CP014222]
3355318
3355394
+
Pro
TGG
[Ensembl]
¡û
>W121019088
AGTS01000089
Betaproteobacteria
Acidovorax sp. NO-1 [AGTS]
41328
41404
+
Pro
TGG
[ENA]
¡û
>W121086429
AKJX01000155
Betaproteobacteria
Acidovorax sp. CF316 [AKJX]
26533
26457
-
Pro
TGG
[ENA]
¡û
>W1610028597
AWOT01000077
Betaproteobacteria
Comamonas thiooxydans testosteroni [AWOT]
4866
4790
-
Pro
TGG
[ENA]
¡û
>W1610062631
BCNR01000004
Betaproteobacteria
Comamonas terrigena NBRC 13299 [BCNR]
634276
634200
-
Pro
TGG
[ENA]
¡û
>W1610062632
BCNR01000004
Betaproteobacteria
Comamonas terrigena NBRC 13299 [BCNR]
633133
633057
-
Pro
TGG
[ENA]
¡û
>W1610070560
BCTJ01000001
Betaproteobacteria
Hydrogenophaga palleronii NBRC 102513 [BCTJ]
123908
123832
-
Pro
TGG
[ENA]
¡û
>W1610077617
BCZP01000007
Betaproteobacteria
Delftia acidovorans NBRC 14950 [BCZP]
311146
311222
+
Pro
TGG
[ENA]
¡û
>W1610599170
LFJT01000002
Betaproteobacteria
Delftia sp. JD2 [LFJT]
77718
77642
-
Pro
TGG
[ENA]
¡û
>W1610723830
LMDQ01000014
Betaproteobacteria
Acidovorax sp. Root402 [LMDQ]
598215
598139
-
Pro
TGG
[ENA]
¡û
>W1610729921
LMIJ01000047
Betaproteobacteria
Acidovorax sp. Root219 [LMIJ]
33187
33263
+
Pro
TGG
[ENA]
¡û
>W1610734748
LMLY01000026
Betaproteobacteria
Acidovorax sp. Leaf76 [LMLY]
78479
78555
+
Pro
TGG
[ENA]
¡û
>W1710024499
AWOT01000077
Betaproteobacteria
Comamonas thiooxydans testosteroni [AWOT]
4866
4790
-
Pro
TGG
[ENA]
¡û
>W1710060107
BCNR01000004
Betaproteobacteria
Comamonas terrigena NBRC 13299 [BCNR]
634276
634200
-
Pro
TGG
[ENA]
¡û
>W1710060108
BCNR01000004
Betaproteobacteria
Comamonas terrigena NBRC 13299 [BCNR]
633133
633057
-
Pro
TGG
[ENA]
¡û
>W1710067933
BCTJ01000001
Betaproteobacteria
Hydrogenophaga palleronii NBRC 102513 [BCTJ]
123908
123832
-
Pro
TGG
[ENA]
¡û
>W1710075255
BCZP01000007
Betaproteobacteria
Delftia acidovorans NBRC 14950 [BCZP]
311146
311222
+
Pro
TGG
[ENA]
¡û
>W1710530919
FNPE01000042
Betaproteobacteria
Delftia lacustris [FNPE]
40938
41014
+
Pro
TGG
[ENA]
¡û
>W1710559437
FOMQ01000003
Betaproteobacteria
Paracidovorax konjaci [FOMQ]
210937
210861
-
Pro
TGG
[ENA]
¡û
>W1710578873
FPBX01000014
Betaproteobacteria
Paenacidovorax caeni [FPBX]
101358
101434
+
Pro
TGG
[ENA]
¡û
>W1710720528
LFJT01000002
Betaproteobacteria
Delftia sp. JD2 [LFJT]
77718
77642
-
Pro
TGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK