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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.162407 (70 seq.)
>W1711326610
MBFM01000003
Betaproteobacteria
Thauera phenolivorans ZV-1-C [MBFM]
343111
343035
-
Arg
ACG
[ENA]
¡û
>W1711326611
MBFM01000003
Betaproteobacteria
Thauera phenolivorans ZV-1-C [MBFM]
342991
342915
-
Arg
ACG
[ENA]
¡û
>C171085188
CP018839
Betaproteobacteria
Thauera chlorobenzoica 3CB1 [CP018839]
2678108
2678032
-
Arg
ACG
-
¡û
>C171085189
CP018839
Betaproteobacteria
Thauera chlorobenzoica 3CB1 [CP018839]
2677989
2677913
-
Arg
ACG
-
¡û
>W131050705
AMXA01000006
Betaproteobacteria
Thauera sp. 28 [AMXA]
44364
44440
+
Arg
ACG
[ENA]
¡û
>W131050706
AMXA01000006
Betaproteobacteria
Thauera sp. 28 [AMXA]
44482
44558
+
Arg
ACG
[ENA]
¡û
>W131050756
AMXB01000005
Betaproteobacteria
Thauera sp. 27 [AMXB]
45181
45257
+
Arg
ACG
[ENA]
¡û
>W131050757
AMXB01000005
Betaproteobacteria
Thauera sp. 27 [AMXB]
45299
45375
+
Arg
ACG
[ENA]
¡û
>W131050806
AMXC01000002
Betaproteobacteria
Thauera sp. 63 [AMXC]
174567
174491
-
Arg
ACG
[ENA]
¡û
>W131050807
AMXC01000002
Betaproteobacteria
Thauera sp. 63 [AMXC]
174446
174370
-
Arg
ACG
[ENA]
¡û
>W131050875
AMXD01000067
Betaproteobacteria
Thauera aminoaromatica S2 [AMXD]
6361
6285
-
Arg
ACG
[ENA]
¡û
>W131050876
AMXD01000067
Betaproteobacteria
Thauera aminoaromatica S2 [AMXD]
6242
6166
-
Arg
ACG
[ENA]
¡û
>W131050912
AMXE01000006
Betaproteobacteria
Thauera linaloolentis 47Lol = DSM 12138 [AMXE]
91675
91599
-
Arg
ACG
[ENA]
¡û
>W131050913
AMXE01000006
Betaproteobacteria
Thauera linaloolentis 47Lol = DSM 12138 [AMXE]
91555
91479
-
Arg
ACG
[ENA]
¡û
>W131050961
AMXF01000014
Betaproteobacteria
Thauera phenylacetica B4P [AMXF]
3037
2961
-
Arg
ACG
[ENA]
¡û
>W131050962
AMXF01000014
Betaproteobacteria
Thauera phenylacetica B4P [AMXF]
2918
2842
-
Arg
ACG
[ENA]
¡û
>W131169698
AREX01000011
Betaproteobacteria
Uliginosibacterium gangwonense DSM 18521 [AREX]
6477
6401
-
Arg
ACG
[ENA]
¡û
>W131169699
AREX01000011
Betaproteobacteria
Uliginosibacterium gangwonense DSM 18521 [AREX]
6265
6189
-
Arg
ACG
[ENA]
¡û
>C001323
AM406670
Betaproteobacteria
Azoarcus olearius BH72 [AM406670]
1466348
1466272
-
Arg
ACG
[Ensembl]
¡û
>W141078507
ATJV01000013
Betaproteobacteria
Thauera terpenica 58Eu [ATJV]
110147
110071
-
Arg
ACG
[ENA]
¡û
>W141078508
ATJV01000013
Betaproteobacteria
Thauera terpenica 58Eu [ATJV]
110026
109950
-
Arg
ACG
[ENA]
¡û
>W08008002
ABKT01000015
Betaproteobacteria
Thauera sp. MZ1T [ABKT] MZ1T [ABKT]
78893
78820
-
Arg
ACG
[ENA]
¡û
>W08008003
ABKT01000015
Betaproteobacteria
Thauera sp. MZ1T [ABKT] MZ1T [ABKT]
78774
78701
-
Arg
ACG
[ENA]
¡û
>WENV183695418
ORMF012388140
[ORMF] groundwater metagenome; groundwater
3364
3440
+
Arg
ACG
[ENA]
¢þ
>WENV170561128
CZCA01003231
[CZCA] anaerobic digester metagenome; anaerobic digester
17701
17777
+
Arg
ACG
[ENA]
¢þ
>WENV170561129
CZCA01003231
[CZCA] anaerobic digester metagenome; anaerobic digester
17821
17897
+
Arg
ACG
[ENA]
¢þ
>WENV170650235
JRYD01029883
[JRYD] activated sludge metagenome; activated biomass in a lab-scale reactor treating industrial wastewater at 2 ppm DO
83
159
+
Arg
ACG
[ENA]
¢þ
>WENV170650719
JRYE01013145
[JRYE] activated sludge metagenome; activated biomass in a lab-scale reactor treating industrial wastewater at 4 ppm DO
800
876
+
Arg
ACG
[ENA]
¢þ
>WENV170650725
JRYE01013547
[JRYE] activated sludge metagenome; activated biomass in a lab-scale reactor treating industrial wastewater at 4 ppm DO
8624
8548
-
Arg
ACG
[ENA]
¢þ
>WENV170650726
JRYE01013547
[JRYE] activated sludge metagenome; activated biomass in a lab-scale reactor treating industrial wastewater at 4 ppm DO
8504
8428
-
Arg
ACG
[ENA]
¢þ
>WENV170652558
JRYH01006084
[JRYH] activated sludge metagenome; activated biomass of a wastewater treatment plant treating wastewater generated at dyes and
2582
2658
+
Arg
ACG
[ENA]
¢þ
>WENV170652562
JRYH01006255
[JRYH] activated sludge metagenome; activated biomass of a wastewater treatment plant treating wastewater generated at dyes and
1139
1063
-
Arg
ACG
[ENA]
¢þ
>WENV170652668
JRYH01012892
[JRYH] activated sludge metagenome; activated biomass of a wastewater treatment plant treating wastewater generated at dyes and
2638
2562
-
Arg
ACG
[ENA]
¢þ
>WENV170654721
JRYL01009391
[JRYL] activated sludge metagenome; activated biomass of a wastewater treatment plant treating wastewater from different
153
229
+
Arg
ACG
[ENA]
¢þ
>C181043001
CP020026
Betaproteobacteria
Rhodocyclaceae bacterium Thauera-like [CP020026]
2534679
2534603
-
Arg
ACG
-
¡û
>C181060404
CP022187
Betaproteobacteria
Parazoarcus communis TSPY31 [CP022187]
271765
271841
+
Arg
ACG
-
¡û
>C181060468
CP022188
Betaproteobacteria
Parazoarcus communis TSNA42 [CP022188]
3117027
3117103
+
Arg
ACG
-
¡û
>C181081459
CP023439
Betaproteobacteria
Thauera sp. K11 [CP023439]
2333802
2333878
+
Arg
ACG
-
¡û
>C181081460
CP023439
Betaproteobacteria
Thauera sp. K11 [CP023439]
2333926
2334002
+
Arg
ACG
-
¡û
>C181164197
CP028339
Betaproteobacteria
Thauera aromatica K172 [CP028339]
1754950
1754874
-
Arg
ACG
-
¡û
>C181164198
CP028339
Betaproteobacteria
Thauera aromatica K172 [CP028339]
1754831
1754755
-
Arg
ACG
-
¡û
>C181165165
CP028425
Betaproteobacteria
Zoogloeaceae bacteirum Par-f-2 [CP028425]
2464461
2464385
-
Arg
ACG
-
¡û
>C181176802
CP029331
Betaproteobacteria
Thauera hydrothermalis GD-2 [CP029331]
2427277
2427201
-
Arg
ACG
-
¡û
>C191022917
CP022958
Betaproteobacteria
Azoarcus sp. DD4 [CP022958]
1807043
1806967
-
Arg
ACG
-
¡û
>W141561697
JHYR01000002
Betaproteobacteria
Thauera linaloolentis 47Lol = DSM 12138 [JHYR]
109381
109305
-
Arg
ACG
[ENA]
¡û
>W141561698
JHYR01000002
Betaproteobacteria
Thauera linaloolentis 47Lol = DSM 12138 [JHYR]
109261
109185
-
Arg
ACG
[ENA]
¡û
>W1910785457
MQNN01000024
Betaproteobacteria
Candidatus Dactylopiibacterium carminicum carminicum NFE1 [MQNN]
11661
11585
-
Arg
ACG
[ENA]
¡û
>W1911072270
NMRM01000014
Betaproteobacteria
Candidatus Dactylopiibacterium carminicum carminicum NFDO [NMRM]
37413
37489
+
Arg
ACG
[ENA]
¡û
>W1911072343
NMRN01000068
Betaproteobacteria
Candidatus Dactylopiibacterium carminicum carminicum NFDCM [NMRN]
11671
11595
-
Arg
ACG
[ENA]
¡û
>W1911114373
NOIH01000015
Betaproteobacteria
Thauera propionica KNDSS-Mac4 [NOIH]
43365
43441
+
Arg
ACG
[ENA]
¡û
>W1911114374
NOIH01000015
Betaproteobacteria
Thauera propionica KNDSS-Mac4 [NOIH]
43486
43562
+
Arg
ACG
[ENA]
¡û
>W1810444891
PZKC01000003
Betaproteobacteria
Pseudothauera lacus D20 [PZKC]
92620
92696
+
Arg
ACG
[ENA]
¡û
>W1810679161
QKOE01000007
Betaproteobacteria
Parazoarcus communis SWub3 [QKOE]
64730
64806
+
Arg
ACG
[ENA]
¡û
>W1810679162
QKOE01000007
Betaproteobacteria
Parazoarcus communis SWub3 [QKOE]
64857
64933
+
Arg
ACG
[ENA]
¡û
>C10113221
CP001281
Betaproteobacteria
Thauera aminoaromatica MZ1T [CP001281]
1993722
1993646
-
Arg
ACG
[Ensembl]
¡û
>C10113222
CP001281
Betaproteobacteria
Thauera aminoaromatica MZ1T [CP001281]
1993603
1993527
-
Arg
ACG
[Ensembl]
¡û
>W1511686477
LFRJ01000015
Betaproteobacteria
Thauera humireducens SgZ-1 [LFRJ]
2101532
2101456
-
Arg
ACG
[ENA]
¡û
>W1511686478
LFRJ01000015
Betaproteobacteria
Thauera humireducens SgZ-1 [LFRJ]
2101411
2101335
-
Arg
ACG
[ENA]
¡û
>W11185956
CACR01002275
Betaproteobacteria
Thauera selenatis AX [CACR]
6090
6166
+
Arg
ACG
[ENA]
¡û
>C161075133
CP014646
Betaproteobacteria
Thauera humireducens SgZ-1 [CP014646]
474881
474805
-
Arg
ACG
[Ensembl]
¡û
>C161075134
CP014646
Betaproteobacteria
Thauera humireducens SgZ-1 [CP014646]
474760
474684
-
Arg
ACG
[Ensembl]
¡û
>C161095110
CP016210
Betaproteobacteria
Azoarcus olearius DQS-4 [CP016210]
1551885
1551809
-
Arg
ACG
-
¡û
>W1610071674
BCUG01000002
Betaproteobacteria
Thauera butanivorans NBRC 103042 [BCUG]
162326
162402
+
Arg
ACG
[ENA]
¡û
>W1610071675
BCUG01000002
Betaproteobacteria
Thauera butanivorans NBRC 103042 [BCUG]
162448
162524
+
Arg
ACG
[ENA]
¡û
>W1611063346
MBFM01000003
Betaproteobacteria
Thauera phenolivorans ZV-1-C [MBFM]
343111
343035
-
Arg
ACG
[ENA]
¡û
>W1611063347
MBFM01000003
Betaproteobacteria
Thauera phenolivorans ZV-1-C [MBFM]
342991
342915
-
Arg
ACG
[ENA]
¡û
>W1710068876
BCUG01000002
Betaproteobacteria
Thauera butanivorans NBRC 103042 [BCUG]
162326
162402
+
Arg
ACG
[ENA]
¡û
>W1710068877
BCUG01000002
Betaproteobacteria
Thauera butanivorans NBRC 103042 [BCUG]
162448
162524
+
Arg
ACG
[ENA]
¡û
>W1710539468
FNVJ01000019
Betaproteobacteria
Thauera chlorobenzoica [FNVJ]
36588
36512
-
Arg
ACG
[ENA]
¡û
>W1710539469
FNVJ01000019
Betaproteobacteria
Thauera chlorobenzoica [FNVJ]
36469
36393
-
Arg
ACG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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