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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.162423 (59 seq.)
>W1710857526
LMAI01000010
Bacteroidota
Chryseobacterium aquaticum greenlandense [LMAI]
145914
145990
+
Lys
TTT
[ENA]
¡û
>W1711318320
MAYF01000311
Bacteroidota
Chryseobacterium contaminans [MAYF]
19493
19419
-
Lys
TTT
[ENA]
¡û
>W1711318410
MAYG01000023
Bacteroidota
Chryseobacterium arthrosphaerae [MAYG]
128031
128107
+
Lys
TTT
[ENA]
¡û
>W1711318487
MAYH01000050
Bacteroidota
Chryseobacterium artocarpi [MAYH]
104644
104568
-
Lys
TTT
[ENA]
¡û
>C171083728
CP018786
Bacteroidota
Chryseobacterium indologenes AA5 [CP018786]
737392
737468
+
Lys
TTT
-
¡û
>WENV181205750
OFAP01000880
[OFAP] metagenome; hydrothermal vent
826
752
-
Lys
TTT
[ENA]
¢þ
>WENV181206060
OFAS01001956
[OFAS] metagenome; hydrothermal vent
665
739
+
Lys
TTT
[ENA]
¢þ
>WENV181206925
OFAX01003092
[OFAX] metagenome; hydrothermal vent
486
560
+
Lys
TTT
[ENA]
¢þ
>W141168444
AXUZ01000016
Bacteroidota
Chryseobacterium sp. UNC8MFCol [AXUZ]
122663
122739
+
Lys
TTT
[ENA]
¡û
>W141223088
BACY01000270
Bacteroidota
Flavobacterium sp. B17 [BACY]
28570
28646
+
Lys
TTT
[ENA]
¡û
>W141233122
BAVL01000013
Bacteroidota
Chryseobacterium indologenes NBRC 14944 [BAVL]
142468
142544
+
Lys
TTT
[ENA]
¡û
>W141261512
CCAV010000004
Bacteroidota
Chryseobacterium oranimense G311 [CCAV]
291769
291693
-
Lys
TTT
[ENA]
¡û
>W141289839
JARQ01000010
Bacteroidota
Chryseobacterium hispalense DSM 25574 [JARQ]
98411
98335
-
Lys
TTT
[ENA]
¡û
>WENV183727992
PJTP01012862
[PJTP] soil metagenome; Soil (3) enriched on wood chips: alkali lignin treatment
504
578
+
Lys
TTT
[ENA]
¢þ
>C181056667
CP022058
Bacteroidota
Chryseobacterium indologenes FDAARGOS_337 [CP022058]
4918689
4918765
+
Lys
TTT
-
¡û
>C181092417
CP023968
Bacteroidota
Chryseobacterium indologenes FDAARGOS_379 [CP023968]
147056
147132
+
Lys
TTT
-
¡û
>C191111342
CP033760
Bacteroidota
Chryseobacterium indologenes FDAARGOS_537 [CP033760]
248303
248227
-
Lys
TTT
-
¡û
>C191112423
CP033811
Bacteroidota
Chryseobacterium arthrosphaerae FDAARGOS_519 [CP033811]
337540
337614
+
Lys
TTT
-
¡û
>C191112925
CP033828
Bacteroidota
Chryseobacterium indologenes FDAARGOS_510 [CP033828]
3773985
3773909
-
Lys
TTT
-
¡û
>C191115730
CP033923
Bacteroidota
Chryseobacterium nakagawai G0041 [CP033923]
3991172
3991248
+
Lys
TTT
-
¡û
>C191116208
CP033930
Bacteroidota
Chryseobacterium indologenes H5559 [CP033930]
4296490
4296566
+
Lys
TTT
-
¡û
>C191116295
CP033931
Bacteroidota
Chryseobacterium bernardetii H4638 [CP033931]
4046933
4047007
+
Lys
TTT
-
¡û
>C191116374
CP033932
Bacteroidota
Chryseobacterium bernardetii G0229 [CP033932]
2066169
2066243
+
Lys
TTT
-
¡û
>C191204260
LR134289
Bacteroidota
Chryseobacterium gleum NCTC11432 [LR134289]
4387957
4388031
+
Lys
TTT
-
¡û
>C191209955
LR134386
Bacteroidota
Chryseobacterium nakagawai NCTC13529 [LR134386]
1077870
1077946
+
Lys
TTT
-
¡û
>C191218927
LR215967
Bacteroidota
Chryseobacterium indologenes 3012STDY6981895 [LR215967]
4037408
4037484
+
Lys
TTT
-
¡û
>W09126990
ACKQ01000055
Bacteroidota
Chryseobacterium gleum ATCC 35910 [ACKQ]
22029
21953
-
Lys
TTT
[ENA]
¡û
>W141809530
JPRO01000004
Bacteroidota
Chryseobacterium luteum [JPRO]
185180
185104
-
Lys
TTT
[ENA]
¡û
>W141817715
JQKZ01000007
Bacteroidota
Chryseobacterium sp. CF284 [JQKZ]
119501
119577
+
Lys
TTT
[ENA]
¡û
>W141819079
JQMA01000009
Bacteroidota
Chryseobacterium sp. CF299 [JQMA]
119516
119592
+
Lys
TTT
[ENA]
¡û
>W1910439647
FWDI01000005
Bacteroidota
Chryseobacterium phocaeense 6021061333 [FWDI]
147605
147679
+
Lys
TTT
[ENA]
¡û
>W1911680510
QICX01000016
Bacteroidota
Chryseobacterium sp. CBTAP 102 [QICX]
17817
17891
+
Lys
TTT
[ENA]
¡û
>W1911701200
QNUE01000006
Bacteroidota
Chryseobacterium flavum KCTC 12877 [QNUE]
81204
81278
+
Lys
TTT
[ENA]
¡û
>W1911701931
QNVV01000004
Bacteroidota
Chryseobacterium pennipullorum 7_F195 [QNVV]
93790
93714
-
Lys
TTT
[ENA]
¡û
>W1810234078
PPED02000006
Bacteroidota
Chryseobacterium phosphatilyticum ISE14 [PPED]
109824
109748
-
Lys
TTT
[ENA]
¡û
>W1810475448
QAJA01000773
Bacteroidota
Chryseobacterium sp. HMWF028 [QAJA]
507
581
+
Lys
TTT
[ENA]
¡û
>W1810609215
QGTV01000007
Bacteroidota
Chryseobacterium sp. AG844 [QGTV]
117234
117160
-
Lys
TTT
[ENA]
¡û
>W1810707215
QNFY01000012
Bacteroidota
Chryseobacterium lathyri KCTC 22544 [QNFY]
36806
36880
+
Lys
TTT
[ENA]
¡û
>W1810860729
QTTJ01000001
Bacteroidota
Chryseobacterium sp. 1335 [QTTJ]
2757024
2756950
-
Lys
TTT
[ENA]
¡û
>W1510072584
CDHM01000004
Bacteroidota
Chryseobacterium oranimense G311 [CDHM]
291769
291693
-
Lys
TTT
[ENA]
¡û
>W1511432535
JUGO01000013
Bacteroidota
Chryseobacterium sp. YR485 [JUGO]
122206
122282
+
Lys
TTT
[ENA]
¡û
>W1511587138
LAZY01000022
Bacteroidota
Chryseobacterium indologenes J31 [LAZY]
52296
52372
+
Lys
TTT
[ENA]
¡û
>W1511685252
LFNF01000003
Bacteroidota
Chryseobacterium sp. BLS98 [LFNF]
106253
106329
+
Lys
TTT
[ENA]
¡û
>W1511699508
LGIP01000019
Bacteroidota
Chryseobacterium sp. Hurlbut01 [LGIP]
462422
462346
-
Lys
TTT
[ENA]
¡û
>C161055034
CP013293
Bacteroidota
Chryseobacterium sp. IHB B 17019 [CP013293]
128208
128282
+
Lys
TTT
[Ensembl]
¡û
>W121086480
AKJY01000063
Bacteroidota
Chryseobacterium populi CF314 [AKJY]
119250
119326
+
Lys
TTT
[ENA]
¡û
>W1610205664
FCNN01000197
Bacteroidota
Chryseobacterium indologenes [FCNN]
16761
16685
-
Lys
TTT
[ENA]
¡û
>W1610719907
LMAI01000010
Bacteroidota
Chryseobacterium aquaticum greenlandense [LMAI]
145914
145990
+
Lys
TTT
[ENA]
¡û
>W1611061663
MAYF01000311
Bacteroidota
Chryseobacterium contaminans [MAYF]
19493
19419
-
Lys
TTT
[ENA]
¡û
>W1611061753
MAYG01000023
Bacteroidota
Chryseobacterium arthrosphaerae [MAYG]
128031
128107
+
Lys
TTT
[ENA]
¡û
>W1611061830
MAYH01000050
Bacteroidota
Chryseobacterium artocarpi [MAYH]
104644
104568
-
Lys
TTT
[ENA]
¡û
>W1710207165
FCNN01000197
Bacteroidota
Chryseobacterium indologenes [FCNN]
16761
16685
-
Lys
TTT
[ENA]
¡û
>W1710522372
FNHD01000006
Bacteroidota
Chryseobacterium taihuense [FNHD]
45318
45394
+
Lys
TTT
[ENA]
¡û
>W1710540324
FNWQ01000005
Bacteroidota
Chryseobacterium culicis [FNWQ]
275127
275051
-
Lys
TTT
[ENA]
¡û
>W1710545861
FOBV01000005
Bacteroidota
Chryseobacterium taichungense [FOBV]
134458
134534
+
Lys
TTT
[ENA]
¡û
>W1710565778
FORL01000008
Bacteroidota
Chryseobacterium indologenes [FORL]
111467
111391
-
Lys
TTT
[ENA]
¡û
>W1710585948
FQWT01000008
Bacteroidota
Chryseobacterium oranimense [FQWT]
109774
109850
+
Lys
TTT
[ENA]
¡û
>W1710591105
FRBM01000008
Bacteroidota
Chryseobacterium contaminans [FRBM]
125327
125401
+
Lys
TTT
[ENA]
¡û
>W1710596686
FTMT01000015
Bacteroidota
Chryseobacterium sp. RU33C [FTMT]
17668
17744
+
Lys
TTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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