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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.162516 (61 seq.)
>W131224628
AUCY01000012
Thermodesulfobacteriota
Desulfovibrio cuneatus DSM 11391 [AUCY]
22822
22898
+
Asp
GTC
[ENA]
¡û
>W131224629
AUCY01000012
Thermodesulfobacteriota
Desulfovibrio cuneatus DSM 11391 [AUCY]
22949
23025
+
Asp
GTC
[ENA]
¡û
>W1711317482
MAXI01000045
Thermodesulfobacteriota
Desulfovibrio sp. S3730MH75 [MAXI]
22802
22878
+
Asp
GTC
[ENA]
¡û
>W1711317498
MAXI01000116
Thermodesulfobacteriota
Desulfovibrio sp. S3730MH75 [MAXI]
1676
1752
+
Asp
GTC
[ENA]
¡û
>W131161023
AQXE01000011
Thermodesulfobacteriota
Desulfovibrio oxyclinae DSM 11498 [AQXE]
151
75
-
Asp
GTC
[ENA]
¡û
>W131161027
AQXE01000023
Thermodesulfobacteriota
Desulfovibrio oxyclinae DSM 11498 [AQXE]
338
262
-
Asp
GTC
[ENA]
¡û
>W131224790
AUDB01000003
Thermodesulfobacteriota
Maridesulfovibrio hydrothermalis AM13 = DSM 14728 [AUDB]
38865
38941
+
Asp
GTC
[ENA]
¡û
>W131224792
AUDB01000003
Thermodesulfobacteriota
Maridesulfovibrio hydrothermalis AM13 = DSM 14728 [AUDB]
44869
44945
+
Asp
GTC
[ENA]
¡û
>W131224811
AUDB01000005
Thermodesulfobacteriota
Maridesulfovibrio hydrothermalis AM13 = DSM 14728 [AUDB]
77882
77958
+
Asp
GTC
[ENA]
¡û
>W131224862
AUDC01000011
Thermodesulfobacteriota
Maridesulfovibrio zosterae DSM 11974 [AUDC]
280623
280699
+
Asp
GTC
[ENA]
¡û
>W131224874
AUDC01000012
Thermodesulfobacteriota
Maridesulfovibrio zosterae DSM 11974 [AUDC]
474238
474314
+
Asp
GTC
[ENA]
¡û
>W131224889
AUDC01000018
Thermodesulfobacteriota
Maridesulfovibrio zosterae DSM 11974 [AUDC]
114777
114701
-
Asp
GTC
[ENA]
¡û
>W131224586
AUCX01000015
Thermodesulfobacteriota
Maridesulfovibrio bastinii DSM 16055 [AUCX]
71173
71097
-
Asp
GTC
[ENA]
¡û
>C008087
CP000527
Thermodesulfobacteriota
Nitratidesulfovibrio vulgaris DP4 [CP000527]
3149718
3149642
-
Asp
GTC
[Ensembl]
¡û
>C008121
AE017285
Thermodesulfobacteriota
Nitratidesulfovibrio vulgaris str. Hildenborough [AE017285]
318914
318990
+
Asp
GTC
[Ensembl]
¡û
>WENV180534395
OCHM01005786
[OCHM] human gut metagenome; human gut
3606
3682
+
Asp
GTC
[ENA]
¢þ
>WENV180894671
ODMR01174889
[ODMR] human metagenome; G_DNA_Stool
153
77
-
Asp
GTC
[ENA]
¢þ
>WENV181271351
OFGF01022483
[OFGF] mouse gut metagenome; faeces
484
408
-
Asp
GTC
[ENA]
¢þ
>WENV181272595
OFGG01028488
[OFGG] mouse gut metagenome; faeces
331
255
-
Asp
GTC
[ENA]
¢þ
>WENV181441794
OGDN01019740
[OGDN] human gut metagenome; human gut
319
243
-
Asp
GTC
[ENA]
¢þ
>WENV181903310
OGXX01000853
[OGXX] human gut metagenome; faeces
15682
15606
-
Asp
GTC
[ENA]
¢þ
>WENV182011915
OHBM01004574
[OHBM] human gut metagenome; faeces
1443
1519
+
Asp
GTC
[ENA]
¢þ
>W141201079
AZAO01000006
Thermodesulfobacteriota
Nitratidesulfovibrio termitidis HI1 [AZAO]
1016671
1016595
-
Asp
GTC
[ENA]
¡û
>W141201080
AZAO01000006
Thermodesulfobacteriota
Nitratidesulfovibrio termitidis HI1 [AZAO]
1016495
1016419
-
Asp
GTC
[ENA]
¡û
>WENV182719620
OJPN01000348
[OJPN] human gut metagenome; stool sample
1202
1278
+
Asp
GTC
[ENA]
¢þ
>W141277854
JAEX01000002
Thermodesulfobacteriota
Desulfocurvus vexinensis DSM 17965 [JAEX]
111060
111136
+
Asp
GTC
[ENA]
¡û
>W141277855
JAEX01000002
Thermodesulfobacteriota
Desulfocurvus vexinensis DSM 17965 [JAEX]
111318
111394
+
Asp
GTC
[ENA]
¡û
>WENV183223435
OLQM01020991
[OLQM] human gut metagenome; faeces
1531
1607
+
Asp
GTC
[ENA]
¢þ
>WENV183747224
PPCM01000476
[PPCM] marine sediment metagenome; marine sediment
27040
26964
-
Asp
GTC
[ENA]
¢þ
>WENV170071055
CDZQ01044710
[CDZQ] gut metagenome; human stools
10955
10879
-
Asp
GTC
[ENA]
¢þ
>WENV170699400
LGVF01544743
[LGVF] marine sediment metagenome; combined push core samples #3730, #5133, and #5579 collected at Hydrate Ridge
513
437
-
Asp
GTC
[ENA]
¢þ
>W09106244
AATW01000009
Thermodesulfobacteriota
Nitratidesulfovibrio vulgaris subsp. vulgaris DP4 [AATW]
143076
143000
-
Asp
GTC
[ENA]
¡û
>W09118006
ACCN01000005
Thermodesulfobacteriota
Maridesulfovibrio salexigens DSM 2638 [ACCN]
116872
116796
-
Asp
GTC
[ENA]
¡û
>W09118007
ACCN01000005
Thermodesulfobacteriota
Maridesulfovibrio salexigens DSM 2638 [ACCN]
112683
112607
-
Asp
GTC
[ENA]
¡û
>W09134071
ACQX01000009
Thermodesulfobacteriota
Nitratidesulfovibrio vulgaris RCH1 [ACQX]
18419
18495
+
Asp
GTC
[ENA]
¡û
>W141779011
JONL01000005
Thermodesulfobacteriota
Maridesulfovibrio frigidus DSM 17176 [JONL]
185750
185826
+
Asp
GTC
[ENA]
¡û
>W141779013
JONL01000005
Thermodesulfobacteriota
Maridesulfovibrio frigidus DSM 17176 [JONL]
201486
201562
+
Asp
GTC
[ENA]
¡û
>W1910020685
BDUJ01000003
Thermodesulfobacteriota
Nitratidesulfovibrio sp. HK-II HK-II [BDUJ]
208355
208279
-
Asp
GTC
[ENA]
¡û
>W1910182284
BJMT01000006
Thermodesulfobacteriota
Desulfovibrio desulfuricans NBRC 13699 [BJMT]
195380
195304
-
Asp
GTC
[ENA]
¡û
>W1910182285
BJMT01000006
Thermodesulfobacteriota
Desulfovibrio desulfuricans NBRC 13699 [BJMT]
195232
195156
-
Asp
GTC
[ENA]
¡û
>C09104232
CP001649
Thermodesulfobacteriota
Maridesulfovibrio salexigens DSM 2638 [CP001649]
3614439
3614515
+
Asp
GTC
[Ensembl]
¡û
>C09104233
CP001649
Thermodesulfobacteriota
Maridesulfovibrio salexigens DSM 2638 [CP001649]
3618628
3618704
+
Asp
GTC
[Ensembl]
¡û
>C09104409
CP001197
Thermodesulfobacteriota
Nitratidesulfovibrio vulgaris [CP001197]
1946464
1946388
-
Asp
GTC
[Ensembl]
¡û
>C141011905
FO203519
Thermodesulfobacteriota
Maridesulfovibrio hydrothermalis [FO203519]
1732499
1732575
+
Asp
GTC
-
¡û
>C141011907
FO203519
Thermodesulfobacteriota
Maridesulfovibrio hydrothermalis [FO203519]
1738503
1738579
+
Asp
GTC
-
¡û
>C141011958
FO203519
Thermodesulfobacteriota
Maridesulfovibrio hydrothermalis [FO203519]
1563596
1563520
-
Asp
GTC
-
¡û
>W10111391
ADDI01000023
Thermodesulfobacteriota
Pseudodesulfovibrio aespoeensis Aspo-2 [ADDI]
728
652
-
Asp
GTC
[ENA]
¡û
>C11106860
CP002431
Thermodesulfobacteriota
Pseudodesulfovibrio aespoeensis Aspo-2 [CP002431]
3172654
3172578
-
Asp
GTC
[Ensembl]
¡û
>C11107422
CP002297
Thermodesulfobacteriota
Nitratidesulfovibrio vulgaris RCH1 [CP002297]
323480
323556
+
Asp
GTC
[Ensembl]
¡û
>W11114334
ADDI01000023
Thermodesulfobacteriota
Pseudodesulfovibrio aespoeensis Aspo-2 [ADDI]
728
652
-
Asp
GTC
[ENA]
¡û
>W11149139
AEUJ01000006
Thermodesulfobacteriota
Pseudodesulfovibrio mercurii ND132 [AEUJ]
41864
41940
+
Asp
GTC
[ENA]
¡û
>W11178821
AGFG01000035
Thermodesulfobacteriota
Desulfovibrio sp. A2 [AGFG]
46328
46252
-
Asp
GTC
[ENA]
¡û
>C121008989
CP003220
Thermodesulfobacteriota
Pseudodesulfovibrio mercurii ND132 [CP003220]
3169898
3169974
+
Asp
GTC
[Ensembl]
¡û
>C161068263
CP014206
Thermodesulfobacteriota
Pseudodesulfovibrio indicus J2 [CP014206]
3885875
3885799
-
Asp
GTC
[Ensembl]
¡û
>W1610046076
BBCB01000132
Thermodesulfobacteriota
Salidesulfovibrio brasiliensis JCM 12178 [BBCB]
4934
5010
+
Asp
GTC
[ENA]
¡û
>W1610046081
BBCB01000159
Thermodesulfobacteriota
Salidesulfovibrio brasiliensis JCM 12178 [BBCB]
589
513
-
Asp
GTC
[ENA]
¡û
>C131018087
FO203522
Thermodesulfobacteriota
Maridesulfovibrio hydrothermalis AM13 = DSM 14728 [FO203522]
1732499
1732575
+
Asp
GTC
[Ensembl]
¡û
>C131018089
FO203522
Thermodesulfobacteriota
Maridesulfovibrio hydrothermalis AM13 = DSM 14728 [FO203522]
1738503
1738579
+
Asp
GTC
[Ensembl]
¡û
>C131018140
FO203522
Thermodesulfobacteriota
Maridesulfovibrio hydrothermalis AM13 = DSM 14728 [FO203522]
1563596
1563520
-
Asp
GTC
[Ensembl]
¡û
>W1710042872
BBCB01000132
Thermodesulfobacteriota
Salidesulfovibrio brasiliensis JCM 12178 [BBCB]
4934
5010
+
Asp
GTC
[ENA]
¡û
>W1710042877
BBCB01000159
Thermodesulfobacteriota
Salidesulfovibrio brasiliensis JCM 12178 [BBCB]
589
513
-
Asp
GTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK