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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.162567 (49 seq.)
>W1710996751
LQBR01000003
Gammaproteobacteria
Microbulbifer sp. ZGT114 [LQBR]
75274
75350
+
Met
CAT
[ENA]
¡û
>W1711004683
LQIY01000022
Gammaproteobacteria
Vibrio sp. MEBiC08052 [LQIY]
52838
52914
+
Met
CAT
[ENA]
¡û
>W1711029540
LRFG01000003
Gammaproteobacteria
Microbulbifer flavimaris WRN-8 [LRFG]
75274
75350
+
Met
CAT
[ENA]
¡û
>W1711047328
LROY01000001
Gammaproteobacteria
Microbulbifer sp. Q7 [LROY]
95880
95956
+
Met
CAT
[ENA]
¡û
>W1711268647
LZDE01000335
Gammaproteobacteria
Microbulbifer mangrovi [LZDE]
42702
42626
-
Met
CAT
[ENA]
¡û
>W131162196
AQYJ01000020
Gammaproteobacteria
Microbulbifer variabilis ATCC 700307 [AQYJ]
74211
74287
+
Met
CAT
[ENA]
¡û
>W131229548
AUGW01000016
Gammaproteobacteria
Oceanospirillum maris DSM 6286 [AUGW]
22523
22599
+
Met
CAT
[ENA]
¡û
>W131214996
ATUQ01000004
Gammaproteobacteria
Simiduia agarivorans SA1 = DSM 21679 [ATUQ]
76934
76858
-
Met
CAT
[ENA]
¡û
>w015094
AAOW01000016
Gammaproteobacteria
Neptuniibacter caesariensis MED92 [AAOW]
4819
4895
+
Met
CAT
[ENA]
¡û
>C171030202
CP014143
Gammaproteobacteria
Microbulbifer aggregans CCB-MM1 [CP014143]
1459585
1459509
-
Met
CAT
-
¡û
>C171085070
CP018835
Gammaproteobacteria
Vibrio gazogenes ATCC 43942 [CP018835, CP018836]
1261440
1261516
+
Met
CAT
-
¡û
>C171097796
CP019650
Gammaproteobacteria
Microbulbifer agarilyticus GP101 [CP019650]
473099
473023
-
Met
CAT
-
¡û
>WENV180368462
OBOF01098208
[OBOF] marine metagenome; ENVO:00002010
252
176
-
Ile2
CAT
[ENA]
¢þ
>WENV182556723
OJDH01000006
[OJDH] seawater metagenome; Sea water
200762
200838
+
Ile2
CAT
[ENA]
¢þ
>WENV170016193
AZIJ01015467
[AZIJ] marine sediment metagenome; enrichment culture of sample MGS-ElMAX(UA) from oil contaminated site at the El-Max
1034
958
-
Met
CAT
[ENA]
¢þ
>WENV170112269
CEGE01000555
[CEGE] microbial mat metagenome; grass silage
18135
18059
-
Met
CAT
[ENA]
¢þ
>W141425798
JELR01000002
Gammaproteobacteria
Microbulbifer sp. HZ11 [JELR]
1010722
1010798
+
Met
CAT
[ENA]
¡û
>WENV170655503
JTFN01039272
[JTFN] activated sludge metagenome; CETP activated sludge from CETP activated sludge from augmented bioreactor treating
109
185
+
Met
CAT
[ENA]
¢þ
>WENV170657463
JTFO01159312
[JTFO] activated sludge metagenome; CETP activated sludge from laboratory augmented bioreactor treating industrial wastewater
113
37
-
Met
CAT
[ENA]
¢þ
>WENV170658355
JTFP01092334
[JTFP] activated sludge metagenome; sludge from laboratory unaugmented bioreactor treating industrial wastewater
216
140
-
Met
CAT
[ENA]
¢þ
>C181173165
CP029064
Gammaproteobacteria
Microbulbifer sp. A4B17 [CP029064]
497600
497524
-
Met
CAT
-
¡û
>W141557740
JHVJ01000022
Gammaproteobacteria
Marinobacterium jannaschii DSM 6295 [JHVJ]
8056
8132
+
Met
CAT
[ENA]
¡û
>W141776063
JOKH01000008
Gammaproteobacteria
Endozoicomonas numazuensis [JOKH]
12966
13042
+
Met
CAT
[ENA]
¡û
>W141778718
JONG01000004
Gammaproteobacteria
Vibrio rhizosphaerae DSM 18581 [JONG]
92202
92126
-
Met
CAT
[ENA]
¡û
>W1910281873
FQXZ01000015
Gammaproteobacteria
Vibrio aerogenes CECT 7868 [FQXZ]
187221
187297
+
Met
CAT
[ENA]
¡û
>W1910285500
FRFG01000013
Gammaproteobacteria
Vibrio quintilis [FRFG]
192766
192842
+
Met
CAT
[ENA]
¡û
>W1910339102
FSSB01000007
Gammaproteobacteria
Vibrio spartinae CECT 9026 [FSSB]
441114
441190
+
Met
CAT
[ENA]
¡û
>W1910378488
FULE01000018
Gammaproteobacteria
Vibrio ruber DSM 16370 CECT 7878 [FULE]
539
463
-
Met
CAT
[ENA]
¡û
>W1910378595
FULF01000161
Gammaproteobacteria
Vibrio gazogenes type strain: CECT 5068 [FULF]
179
255
+
Met
CAT
[ENA]
¡û
>W1910462881
FWPT01000004
Gammaproteobacteria
Parendozoicomonas haliclonae S-B4-1U [FWPT]
51164
51240
+
Met
CAT
[ENA]
¡û
>W1910498794
FXXI01000002
Gammaproteobacteria
Vibrio mangrovi CECT 7927 [FXXI]
91494
91418
-
Met
CAT
[ENA]
¡û
>W1810270695
PREV01000026
Gammaproteobacteria
Microbulbifer pacificus LD25 [PREV]
2183303
2183227
-
Met
CAT
[ENA]
¡û
>W11170329
AFPJ01000043
Gammaproteobacteria
Microbulbifer agarilyticus S89 [AFPJ]
139666
139590
-
Met
CAT
[ENA]
¡û
>C161078717
CP014864
Gammaproteobacteria
Microbulbifer thermotolerans DAU221 [CP014864]
482157
482081
-
Met
CAT
[Ensembl]
¡û
>C131006073
CP003746
Gammaproteobacteria
Simiduia agarivorans SA1 = DSM 21679 [CP003746]
2154110
2154034
-
Met
CAT
[Ensembl]
¡û
>W1610576433
LASA01000069
Gammaproteobacteria
Endozoicomonas arenosclerae ab112 [LASA]
15709
15633
-
Met
CAT
[ENA]
¡û
>W1610576541
LASB01000256
Gammaproteobacteria
Endozoicomonas arenosclerae E-MC227 [LASB]
15992
15916
-
Met
CAT
[ENA]
¡û
>W1610851408
LQBR01000003
Gammaproteobacteria
Microbulbifer sp. ZGT114 [LQBR]
75274
75350
+
Met
CAT
[ENA]
¡û
>W1610855277
LQIY01000022
Gammaproteobacteria
Vibrio sp. MEBiC08052 [LQIY]
52838
52914
+
Met
CAT
[ENA]
¡û
>W1610877808
LRFG01000003
Gammaproteobacteria
Microbulbifer flavimaris WRN-8 [LRFG]
75274
75350
+
Met
CAT
[ENA]
¡û
>W1610888457
LROY01000001
Gammaproteobacteria
Microbulbifer sp. Q7 [LROY]
95880
95956
+
Met
CAT
[ENA]
¡û
>W1710520090
FNFH01000005
Gammaproteobacteria
Microbulbifer yueqingensis [FNFH]
81152
81228
+
Met
CAT
[ENA]
¡û
>W1710532745
FNQO01000004
Gammaproteobacteria
Microbulbifer marinus [FNQO]
79191
79267
+
Met
CAT
[ENA]
¡û
>W1710533733
FNRJ01000001
Gammaproteobacteria
Marinobacterium iners DSM 11526 [FNRJ]
385338
385414
+
Met
CAT
[ENA]
¡û
>W1710557204
FOKT01000004
Gammaproteobacteria
Microbulbifer thermotolerans [FOKT]
357186
357110
-
Met
CAT
[ENA]
¡û
>W1710582821
FQUH01000003
Gammaproteobacteria
Vibrio gazogenes DSM 21264 [FQUH]
16597
16521
-
Met
CAT
[ENA]
¡û
>W1710583714
FQVA01000003
Gammaproteobacteria
Microbulbifer donghaiensis [FQVA]
77557
77633
+
Met
CAT
[ENA]
¡û
>W1710694922
LASA01000069
Gammaproteobacteria
Endozoicomonas arenosclerae ab112 [LASA]
15709
15633
-
Met
CAT
[ENA]
¡û
>W1710695030
LASB01000256
Gammaproteobacteria
Endozoicomonas arenosclerae E-MC227 [LASB]
15992
15916
-
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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