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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.162602 (23 seq.)
>W1711091077
LTBC01000001
Bacillota
Moorella mulderi DSM 14980 [LTBC]
469726
469802
+
Arg
CCT
[ENA]
¡û
>W1711352271
MDDB01000003
Bacillota
Moorella thermoacetica [MDDB]
315525
315601
+
Arg
CCT
[ENA]
¡û
>W1711352327
MDDC01000009
Bacillota
Moorella thermoacetica [MDDC]
116637
116561
-
Arg
CCT
[ENA]
¡û
>W1711352374
MDDD01000006
Bacillota
Moorella thermoacetica [MDDD]
2100
2024
-
Arg
CCT
[ENA]
¡û
>W1711352416
MDDE01000002
Bacillota
Moorella thermoacetica [MDDE]
153443
153367
-
Arg
CCT
[ENA]
¡û
>W1711428519
MIHH01000001
Bacillota
Moorella thermoacetica [MIHH]
268462
268538
+
Arg
CCT
[ENA]
¡û
>W1711428608
MIIF01000012
Bacillota
Moorella thermoacetica [MIIF]
2100
2024
-
Arg
CCT
[ENA]
¡û
>C171055163
CP017019
Bacillota
Moorella thermoacetica DSM 103132 [CP017019]
26090
26166
+
Arg
CCT
-
¡û
>C171058936
CP017237
Bacillota
Moorella thermoacetica DSM 103284 [CP017237]
26768
26844
+
Arg
CCT
-
¡û
>C014153
CP000232
Bacillota
Moorella thermoacetica [CP000232]
26539
26615
+
Arg
CCT
[Ensembl]
¡û
>WENV181404039
OGBZ01000195
[OGBZ] sediment metagenome; hot spring sediment
3422
3346
-
Arg
CCT
[ENA]
¢þ
>W141229796
BARR01000025
Bacillota
Moorella thermoacetica Y72 [BARR]
26228
26304
+
Arg
CCT
[ENA]
¡û
>C191073409
CP031054
Bacillota
Moorella thermoacetica 39073-HH [CP031054]
26090
26166
+
Arg
CCT
-
¡û
>W09100954
AADT03000033
Bacillota
Moorella thermoacetica ATCC 39073 [AADT]
15373
15449
+
Arg
CCT
[ENA]
¡û
>W1910180047
BJKN01000001
Bacillota
Moorella sp. E308F [BJKN]
748138
748214
+
Arg
CCT
[ENA]
¡û
>W1910180128
BJKO01000001
Bacillota
Moorella sp. E306M [BJKO]
1210826
1210750
-
Arg
CCT
[ENA]
¡û
>W1810010453
BFFN01000017
Bacillota
Moorella sp. Hama-1 [BFFN]
16693
16769
+
Arg
CCT
[ENA]
¡û
>W1810367288
PVXL01000045
Bacillota
Moorella stamsii DSM 26271 [PVXL]
32812
32888
+
Arg
CCT
[ENA]
¡û
>W1810367331
PVXM01000015
Bacillota
Moorella humiferrea DSM 23265 [PVXM]
14661
14737
+
Arg
CCT
[ENA]
¡û
>C151094339
CP012369
Bacillota
Moorella thermoacetica DSM 521 [CP012369]
26190
26266
+
Arg
CCT
-
¡û
>C151094389
CP012370
Bacillota
Moorella thermoacetica DSM 2955 [CP012370]
26189
26265
+
Arg
CCT
-
¡û
>W1510100278
CELZ01000044
Bacillota
Moorella glycerini NMP [CELZ]
76060
76136
+
Arg
CCT
[ENA]
¡û
>W1610925276
LTBC01000001
Bacillota
Moorella mulderi DSM 14980 [LTBC]
469726
469802
+
Arg
CCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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