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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.162634 (26 seq.)
>W1711438295
MIQH01000777
Gammaproteobacteria
Bathymodiolus thermophilus thioautotrophic gill symbiont [MIQH]
92
16
-
Asp
GTC
[ENA]
¡û
>W1711438297
MIQH01000928
Gammaproteobacteria
Bathymodiolus thermophilus thioautotrophic gill symbiont [MIQH]
6873
6949
+
Asp
GTC
[ENA]
¡û
>C006119
CP000488
Gammaproteobacteria
Candidatus Ruthia magnifica str. Cm [Calyptogena magnifica] [CP000488]
708510
708434
-
Asp
GTC
[Ensembl]
¡û
>C007256
AP009247
Gammaproteobacteria
Candidatus Vesicomyosocius okutanii HA [AP009247]
628827
628751
-
Asp
GTC
[Ensembl]
¡û
>W141290085
JARW01000010
Gammaproteobacteria
Candidatus Ruthturnera calyptogenae magnifica UCD-CM [JARW]
1552
1476
-
Asp
GTC
[ENA]
¡û
>WENV170572401
FLOH01000815
[FLOH] marine metagenome; water
3561
3637
+
Asp
GTC
[ENA]
¢þ
>WENV170575842
FPHR01000014
[FPHR] hydrothermal vent metagenome genome assembly, contig: NODE_54.; water
27717
27641
-
Asp
GTC
[ENA]
¢þ
>WENV170575924
FPHU01000053
[FPHU] hydrothermal vent metagenome genome assembly, contig: NODE_233.; water
16280
16204
-
Asp
GTC
[ENA]
¢þ
>WENV170575933
FPHU01000125
[FPHU] hydrothermal vent metagenome genome assembly, contig: NODE_233.; water
94
18
-
Asp
GTC
[ENA]
¢þ
>WENV170576038
FPHY01000059
[FPHY] hydrothermal vent metagenome genome assembly, contig: NODE_87.; water
6691
6767
+
Asp
GTC
[ENA]
¢þ
>WENV170576051
FPHZ01000037
[FPHZ] hydrothermal vent metagenome genome assembly, contig: NODE_182.; water
8174
8098
-
Asp
GTC
[ENA]
¢þ
>WENV170576066
FPIA01000026
[FPIA] hydrothermal vent metagenome genome assembly, contig: NODE_20.; water
7217
7293
+
Asp
GTC
[ENA]
¢þ
>WENV170623932
FUWD013173066
[FUWD] metagenome; unknown
5711
5787
+
Asp
GTC
[ENA]
¢þ
>WENV170623975
FUWD013173534
[FUWD] metagenome; unknown
9239
9163
-
Asp
GTC
[ENA]
¢þ
>WENV170624143
FUWD013175679
[FUWD] metagenome; unknown
3665
3741
+
Asp
GTC
[ENA]
¢þ
>WENV170632225
FUWD013379680
[FUWD] metagenome; unknown
5711
5787
+
Asp
GTC
[ENA]
¢þ
>WENV170632264
FUWD013380081
[FUWD] metagenome; unknown
9239
9163
-
Asp
GTC
[ENA]
¢þ
>WENV170632426
FUWD013381799
[FUWD] metagenome; unknown
3665
3741
+
Asp
GTC
[ENA]
¢þ
>WENV170665076
JYMV01022309
[JYMV] hydrothermal vent metagenome; Hydrothermal plumes at the Eastern Lau Spreading Center, Western Pacific Ocean
26058
26134
+
Asp
GTC
[ENA]
¢þ
>WENV170766760
LWDU01042658
[LWDU] hydrothermal vent metagenome; deep sea hydrothermal plume seawater
20274
20198
-
Asp
GTC
[ENA]
¢þ
>WENV170766789
LWDU01042775
[LWDU] hydrothermal vent metagenome; deep sea hydrothermal plume seawater
9241
9165
-
Asp
GTC
[ENA]
¢þ
>C191027368
CP024634
Gammaproteobacteria
Bathymodiolus thermophilus thioautotrophic gill symbiont EPR9N [CP024634]
992086
992162
+
Asp
GTC
-
¡û
>C151071167
CP010552
Gammaproteobacteria
Candidatus Thioglobus autotrophicus EF1 [CP010552]
1311472
1311548
+
Asp
GTC
-
¡û
>ENV09001927
ACSG01000031
Uncultured SUP05 cluster bacterium Contig34382
10796
10720
-
Asp
GTC
[ENA]
¡û
>W1510081317
CDSC01000044
Gammaproteobacteria
Bathymodiolus azoricus thioautotrophic gill symbiont thioautotrophic gill symbiont BazSymA [CDSC]
3436
3512
+
Asp
GTC
[ENA]
¡û
>C161000123
AP013042
Gammaproteobacteria
endosymbiont of Bathymodiolus septemdierum str. Myojin knoll Myojin Knoll [AP013042]
482990
483066
+
Asp
GTC
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK