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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.162709 (82 seq.)
>W1710915868
LNUP01000002
Gammaproteobacteria
Pseudomonas sp. EpS/L25 [LNUP]
919675
919751
+
Arg
CCT
[ENA]
¡û
>W1711079651
LSOF01000010
Gammaproteobacteria
Pseudomonas sp. BMS12 [LSOF]
10575
10499
-
Arg
CCT
[ENA]
¡û
>W1711173202
LWCR01000023
Gammaproteobacteria
Pseudomonas oryzihabitans [LWCR]
276625
276549
-
Arg
CCT
[ENA]
¡û
>W1711212829
LXJQ01000008
Gammaproteobacteria
Pseudomonas sp. 1D4 [LXJQ]
147590
147666
+
Arg
CCT
[ENA]
¡û
>W1711256278
LYSP01000047
Gammaproteobacteria
Pseudomonas sp. ENNP23 [LYSP]
28061
28137
+
Arg
CCT
[ENA]
¡û
>W1711357021
MDGV01000013
Gammaproteobacteria
Stutzerimonas stutzeri [MDGV]
1240
1316
+
Arg
CCT
[ENA]
¡û
>W1711723435
MTLN01000008
Gammaproteobacteria
Pseudomonas psychrotolerans [MTLN]
374531
374607
+
Arg
CCT
[ENA]
¡û
>W1711798148
MWUI01000002
Gammaproteobacteria
Stutzerimonas stutzeri [MWUI]
66014
65938
-
Arg
CCT
[ENA]
¡û
>W1711945850
NBMS01000047
Gammaproteobacteria
Pseudomonas sp. A46 [NBMS]
83058
83134
+
Arg
CCT
[ENA]
¡û
>C171044832
CP015992
Gammaproteobacteria
Pseudomonas sp. TCU-HL1 [CP015992]
4585808
4585732
-
Arg
CCT
-
¡û
>C171083167
CP018758
Gammaproteobacteria
Pseudomonas psychrotolerans PRS08-11306 [CP018758]
1526297
1526221
-
Arg
CCT
-
¡û
>W131055647
ANBZ01000079
Gammaproteobacteria
Pseudomonas sp. 313 [ANBZ]
142401
142477
+
Arg
CCT
[ENA]
¡û
>W131231072
AUIE01000001
Gammaproteobacteria
Pseudomonas resinovorans DSM 21078 [AUIE]
162106
162182
+
Arg
CCT
[ENA]
¡û
>W141076151
ATCP01000135
Gammaproteobacteria
Pseudomonas alcaligenes OT 69 [ATCP]
118148
118224
+
Arg
CCT
[ENA]
¡û
>WENV181379654
OFRD01005221
[OFRD] wastewater metagenome; Exp Tend CN 100WW
1465
1541
+
Arg
CCT
[ENA]
¢þ
>WENV181384426
OFRI01000903
[OFRI] wastewater metagenome; Exp Tend VB 90WW
6891
6967
+
Arg
CCT
[ENA]
¢þ
>WENV181398917
OFSE01004037
[OFSE] wastewater metagenome; Exp Tend VB 50WW
591
515
-
Arg
CCT
[ENA]
¢þ
>W141207623
AZNY01000001
Gammaproteobacteria
Pseudomonas sp. MOIL14HWK12:I1 [AZNY]
383649
383725
+
Arg
CCT
[ENA]
¡û
>W141207768
AZOA01000009
Gammaproteobacteria
Pseudomonas sp. MOIL14HWK12:I2 [AZOA]
281515
281439
-
Arg
CCT
[ENA]
¡û
>W141207781
AZOB01000001
Gammaproteobacteria
Pseudomonas oleovorans MOIL14HWK12 [AZOB]
383652
383728
+
Arg
CCT
[ENA]
¡û
>W141231070
BATO01000008
Gammaproteobacteria
Pseudomonas alcaligenes MRY13-0052 [BATO]
68171
68095
-
Arg
CCT
[ENA]
¡û
>W141236924
BBIT01000001
Gammaproteobacteria
Pseudomonas oryzihabitans NBRC 102199 [BBIT]
38841
38917
+
Arg
CCT
[ENA]
¡û
>WENV170708250
LNAP01062915
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
1178
1102
-
Arg
CCT
[ENA]
¢þ
>WENV170966608
MTEY01001027
[MTEY] soil metagenome; soil biostimulated with seedmeal as carbon source
9380
9456
+
Arg
CCT
[ENA]
¢þ
>C191089459
CP032419
Gammaproteobacteria
Pseudomonas cavernae K2W31S-8 [CP032419]
1699129
1699205
+
Arg
CCT
-
¡û
>C191091994
CP032616
Gammaproteobacteria
Pseudomonas sp. DY-1 [CP032616]
2573982
2573906
-
Arg
CCT
-
¡û
>C191123337
CP034337
Gammaproteobacteria
Pseudomonas oryziphila 2014 [CP034337]
4078072
4077996
-
Arg
CCT
-
¡û
>W1910793114
MRCS01000029
Gammaproteobacteria
Pseudomonas sp. ACN8 [MRCS]
68940
69016
+
Arg
CCT
[ENA]
¡û
>W1910808459
MUEH01000007
Gammaproteobacteria
Stutzerimonas stutzeri KMS 55 [MUEH]
141899
141823
-
Arg
CCT
[ENA]
¡û
>W1911246953
NSLB01000002
Gammaproteobacteria
Pseudomonas sp. HAR-UPW-AIA-41 [NSLB]
160984
160908
-
Arg
CCT
[ENA]
¡û
>W1911261753
NSVJ01000001
Gammaproteobacteria
Pseudomonas aeruginosa Rsan-ver [NSVJ]
354455
354379
-
Arg
CCT
[ENA]
¡û
>W1810224304
POUI01000002
Gammaproteobacteria
Stutzerimonas decontaminans ST27MN3 [POUI]
250723
250799
+
Arg
CCT
[ENA]
¡û
>W1810224531
POUM01000018
Gammaproteobacteria
Stutzerimonas stutzeri CCUG 44592 [POUM]
95024
95100
+
Arg
CCT
[ENA]
¡û
>W1810224574
POUN01000003
Gammaproteobacteria
Stutzerimonas stutzeri KC [POUN]
574186
574262
+
Arg
CCT
[ENA]
¡û
>W1810224980
POUT01000018
Gammaproteobacteria
Stutzerimonas stutzeri 24a75 [POUT]
20921
20845
-
Arg
CCT
[ENA]
¡û
>W1810242746
PPXG01000005
Gammaproteobacteria
Stutzerimonas stutzeri 24a13 [PPXG]
164236
164312
+
Arg
CCT
[ENA]
¡û
>W1810378802
PXJI01000046
Gammaproteobacteria
Pseudomonas otitidis PAM-1 [PXJI]
948
872
-
Arg
CCT
[ENA]
¡û
>W1810501381
QBIZ02000001
Gammaproteobacteria
Pseudomonas sp. RIT 411 [QBIZ]
565955
565879
-
Arg
CCT
[ENA]
¡û
>W1810670656
QJRX01000004
Gammaproteobacteria
Pseudomonas alcaligenes MB-090714 [QJRX]
206873
206797
-
Arg
CCT
[ENA]
¡û
>W1810680759
QKRU01000029
Gammaproteobacteria
Pseudomonas sp. 57B-090624 [QKRU]
65291
65367
+
Arg
CCT
[ENA]
¡û
>W1810787099
QRDL01000005
Gammaproteobacteria
Pseudomonas oleovorans AG1002 [QRDL]
259190
259266
+
Arg
CCT
[ENA]
¡û
>C151001288
AP013068
Gammaproteobacteria
Pseudomonas resinovorans NBRC 106553 [AP013068]
4640935
4640859
-
Arg
CCT
[Ensembl]
¡û
>W1511307138
JPMY01000021
Gammaproteobacteria
Pseudomonas sp. ML96 [JPMY]
91631
91555
-
Arg
CCT
[ENA]
¡û
>W1511525060
JYFT01000068
Gammaproteobacteria
Pseudomonas sp. FeS53a [JYFT]
44929
45005
+
Arg
CCT
[ENA]
¡û
>W1511530345
JYKO01000002
Gammaproteobacteria
Pseudomonas sp. LFM046 [JYKO]
477429
477353
-
Arg
CCT
[ENA]
¡û
>W1511530628
JYKV01000001
Gammaproteobacteria
Pseudomonas oryzihabitans RIT370 [JYKV]
491968
491892
-
Arg
CCT
[ENA]
¡û
>W1511542132
JZHA01000002
Gammaproteobacteria
Stenotrophomonas maltophilia #19 [JZHA] #19 [JZHA]
192128
192052
-
Arg
CCT
[ENA]
¡û
>W1511639345
LDPF01000056
Gammaproteobacteria
Pseudomonas putida SF1 [LDPF]
18015
18091
+
Arg
CCT
[ENA]
¡û
>C161063415
CP013987
Gammaproteobacteria
Pseudomonas oryzihabitans USDA-ARS-USMARC-56511 [CP013987]
3336465
3336389
-
Arg
CCT
[Ensembl]
¡û
>W121017945
AGSL01000003
Gammaproteobacteria
Stutzerimonas stutzeri ATCC 14405 = CCUG 16156 [AGSL]
1009
1085
+
Arg
CCT
[ENA]
¡û
>W121023821
AHBD01000004
Gammaproteobacteria
Pseudomonas psychrotolerans L19 [AHBD]
186822
186746
-
Arg
CCT
[ENA]
¡û
>W1610592110
LDSO01000017
Gammaproteobacteria
Pseudomonas psychrotolerans [LDSO]
33257
33333
+
Arg
CCT
[ENA]
¡û
>W1610592196
LDSP01000057
Gammaproteobacteria
Pseudomonas psychrotolerans [LDSP]
26125
26201
+
Arg
CCT
[ENA]
¡û
>W1610592252
LDSQ01000068
Gammaproteobacteria
Pseudomonas psychrotolerans [LDSQ]
33242
33318
+
Arg
CCT
[ENA]
¡û
>W1610592320
LDSR01000098
Gammaproteobacteria
Pseudomonas psychrotolerans [LDSR]
2182
2106
-
Arg
CCT
[ENA]
¡û
>W1610592359
LDSS01000049
Gammaproteobacteria
Pseudomonas psychrotolerans [LDSS]
40642
40566
-
Arg
CCT
[ENA]
¡û
>W1610592408
LDST01000026
Gammaproteobacteria
Pseudomonas psychrotolerans [LDST]
38128
38052
-
Arg
CCT
[ENA]
¡û
>W1610592432
LDSU01000001
Gammaproteobacteria
Pseudomonas psychrotolerans [LDSU]
33273
33349
+
Arg
CCT
[ENA]
¡û
>W1610592560
LDSW01000012
Gammaproteobacteria
Pseudomonas psychrotolerans [LDSW]
33107
33183
+
Arg
CCT
[ENA]
¡û
>W1610592654
LDSX01000057
Gammaproteobacteria
Pseudomonas psychrotolerans [LDSX]
40457
40381
-
Arg
CCT
[ENA]
¡û
>W1610592707
LDSY01000048
Gammaproteobacteria
Pseudomonas psychrotolerans [LDSY]
42356
42280
-
Arg
CCT
[ENA]
¡û
>W1610592759
LDSZ01000036
Gammaproteobacteria
Pseudomonas psychrotolerans [LDSZ]
42260
42184
-
Arg
CCT
[ENA]
¡û
>W1610592797
LDTA01000023
Gammaproteobacteria
Pseudomonas psychrotolerans [LDTA]
40932
40856
-
Arg
CCT
[ENA]
¡û
>W1610774107
LNUP01000002
Gammaproteobacteria
Pseudomonas sp. EpS/L25 [LNUP]
919675
919751
+
Arg
CCT
[ENA]
¡û
>W1610918561
LSOF01000010
Gammaproteobacteria
Pseudomonas sp. BMS12 [LSOF]
10575
10499
-
Arg
CCT
[ENA]
¡û
>W1610981807
LWCR01000023
Gammaproteobacteria
Pseudomonas oryzihabitans [LWCR]
276625
276549
-
Arg
CCT
[ENA]
¡û
>W1710084498
BDMA01000092
Gammaproteobacteria
Pseudomonas resinovorans [BDMA]
2899
2823
-
Arg
CCT
[ENA]
¡û
>W1710508398
FMWB01000008
Gammaproteobacteria
Pseudomonas psychrotolerans [FMWB]
250110
250034
-
Arg
CCT
[ENA]
¡û
>W1710548930
FOED01000005
Gammaproteobacteria
Pseudomonas sp. Snoq117.2 [FOED]
254854
254930
+
Arg
CCT
[ENA]
¡û
>W1710555617
FOJP01000024
Gammaproteobacteria
Pseudomonas otitidis [FOJP]
86777
86701
-
Arg
CCT
[ENA]
¡û
>W1710711390
LDSO01000017
Gammaproteobacteria
Pseudomonas psychrotolerans [LDSO]
33257
33333
+
Arg
CCT
[ENA]
¡û
>W1710711476
LDSP01000057
Gammaproteobacteria
Pseudomonas psychrotolerans [LDSP]
26125
26201
+
Arg
CCT
[ENA]
¡û
>W1710711532
LDSQ01000068
Gammaproteobacteria
Pseudomonas psychrotolerans [LDSQ]
33242
33318
+
Arg
CCT
[ENA]
¡û
>W1710711600
LDSR01000098
Gammaproteobacteria
Pseudomonas psychrotolerans [LDSR]
2182
2106
-
Arg
CCT
[ENA]
¡û
>W1710711639
LDSS01000049
Gammaproteobacteria
Pseudomonas psychrotolerans [LDSS]
40642
40566
-
Arg
CCT
[ENA]
¡û
>W1710711688
LDST01000026
Gammaproteobacteria
Pseudomonas psychrotolerans [LDST]
38128
38052
-
Arg
CCT
[ENA]
¡û
>W1710711712
LDSU01000001
Gammaproteobacteria
Pseudomonas psychrotolerans [LDSU]
33273
33349
+
Arg
CCT
[ENA]
¡û
>W1710711840
LDSW01000012
Gammaproteobacteria
Pseudomonas psychrotolerans [LDSW]
33107
33183
+
Arg
CCT
[ENA]
¡û
>W1710711934
LDSX01000057
Gammaproteobacteria
Pseudomonas psychrotolerans [LDSX]
40457
40381
-
Arg
CCT
[ENA]
¡û
>W1710711987
LDSY01000048
Gammaproteobacteria
Pseudomonas psychrotolerans [LDSY]
42356
42280
-
Arg
CCT
[ENA]
¡û
>W1710712039
LDSZ01000036
Gammaproteobacteria
Pseudomonas psychrotolerans [LDSZ]
42260
42184
-
Arg
CCT
[ENA]
¡û
>W1710712077
LDTA01000023
Gammaproteobacteria
Pseudomonas psychrotolerans [LDTA]
40932
40856
-
Arg
CCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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