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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.162868 (68 seq.)
>W1711069201
LSFM01000021
Bacteroidota
Polaribacter vadi [LSFM]
58487
58564
+
Val
TAC
[ENA]
¡û
>W1711069202
LSFM01000021
Bacteroidota
Polaribacter vadi [LSFM]
58597
58672
+
Val
TAC
[ENA]
¡û
>W1711167260
LVWE01000010
Bacteroidota
Polaribacter atrinae [LVWE]
77711
77634
-
Val
TAC
[ENA]
¡û
>W1711167261
LVWE01000010
Bacteroidota
Polaribacter atrinae [LVWE]
77509
77432
-
Val
TAC
[ENA]
¡û
>W1711584441
MNYM01000017
Bacteroidota
Flavobacteriaceae bacterium CG2_30_31_66 [MNYM]
28871
28948
+
Val
TAC
[ENA]
¡û
>C171063248
CP017477
Bacteroidota
Polaribacter vadi LPB0003 [CP017477]
1608132
1608055
-
Val
TAC
-
¡û
>C171063249
CP017477
Bacteroidota
Polaribacter vadi LPB0003 [CP017477]
1608022
1607947
-
Val
TAC
-
¡û
>W131233830
AUKH01000005
Bacteroidota
Gillisia sp. JM1 [AUKH]
977402
977325
-
Val
TAC
[ENA]
¡û
>w014175
AAOG01000002
Bacteroidota
Polaribacter irgensii 23-P [AAOG]
20138
20215
+
Val
TAC
[ENA]
¡û
>WENV180038696
LLBY010002354
[LLBY] soil metagenome; soil from tomato rhizosphere
153302
153379
+
Val
TAC
[ENA]
¢þ
>WENV180242348
OBDI01194332
[OBDI] metagenome; diffuse fluid
198
123
-
Val
TAC
[ENA]
¢þ
>WENV180383113
OBOU01001456
[OBOU] marine metagenome; ENV:00002010
1913
1988
+
Val
TAC
[ENA]
¢þ
>WENV180386413
OBPB01168106
[OBPB] marine metagenome; Sterile flask
65
140
+
Val
TAC
[ENA]
¢þ
>WENV181392567
OFRW01084241
[OFRW] seawater metagenome; seawater
89
166
+
Val
TAC
[ENA]
¢þ
>WENV182547676
OJBT01000403
[OJBT] seawater metagenome; Sea water
550
475
-
Val
TAC
[ENA]
¢þ
>WENV182558705
OJDN01001007
[OJDN] seawater metagenome; Sea water
6938
7013
+
Val
TAC
[ENA]
¢þ
>WENV182560373
OJDU01000173
[OJDU] seawater metagenome; Sea water
3105
3030
-
Val
TAC
[ENA]
¢þ
>WENV182565611
OJEH01017967
[OJEH] seawater metagenome; Sea water
227
152
-
Val
TAC
[ENA]
¢þ
>WENV182567389
OJEO01000364
[OJEO] seawater metagenome; Sea water
13973
14048
+
Val
TAC
[ENA]
¢þ
>WENV182567853
OJEP01000740
[OJEP] seawater metagenome; Sea water
3757
3682
-
Val
TAC
[ENA]
¢þ
>WENV182578733
OJGP01000851
[OJGP] seawater metagenome; Sea water
2990
3065
+
Val
TAC
[ENA]
¢þ
>WENV182585309
OJHH01007667
[OJHH] seawater metagenome; Sea water
2100
2175
+
Val
TAC
[ENA]
¢þ
>WENV182590777
OJIK01000488
[OJIK] seawater metagenome; Sea water
6272
6197
-
Val
TAC
[ENA]
¢þ
>WENV182594225
OJIV01001761
[OJIV] seawater metagenome; Sea water
868
793
-
Val
TAC
[ENA]
¢þ
>WENV183056115
OLHI01000127
[OLHI] seawater metagenome; Sea water
21007
21082
+
Val
TAC
[ENA]
¢þ
>WENV183065220
OLII01063553
[OLII] seawater metagenome; Sea water
2
77
+
Val
TAC
[ENA]
¢þ
>WENV183621360
OOFT01071326
[OOFT] marine metagenome; sea ice
161
84
-
Val
TAC
[ENA]
¢þ
>WENV183622835
OOFW01020748
[OOFW] marine metagenome; sea ice
409
484
+
Val
TAC
[ENA]
¢þ
>WENV183623696
OOGA01040325
[OOGA] marine metagenome; sea ice
314
239
-
Val
TAC
[ENA]
¢þ
>WENV183625706
OOGG01011435
[OOGG] marine metagenome; sea ice
230
155
-
Val
TAC
[ENA]
¢þ
>WENV183627293
OOGK01088880
[OOGK] marine metagenome; seawater
89
166
+
Val
TAC
[ENA]
¢þ
>WENV170327390
CESU01076005
[CESU] marine metagenome genome assembly TARA_082_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
261
186
-
Val
TAC
[ENA]
¢þ
>WENV170538031
CEWR01047068
[CEWR] marine metagenome genome assembly TARA_085_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
7196
7273
+
Val
TAC
[ENA]
¢þ
>WENV170539261
CEWR01158534
[CEWR] marine metagenome genome assembly TARA_085_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
1323
1400
+
Val
TAC
[ENA]
¢þ
>WENV170568312
FLMP01029410
[FLMP] seawater metagenome; seawater
413
336
-
Val
TAC
[ENA]
¢þ
>WENV170571829
FLOH01000330
[FLOH] marine metagenome; water
51375
51452
+
Val
TAC
[ENA]
¢þ
>WENV170613209
FUWD012789716
[FUWD] metagenome; unknown
457
382
-
Val
TAC
[ENA]
¢þ
>WENV170624722
FUWD013185698
[FUWD] metagenome; unknown
426
501
+
Val
TAC
[ENA]
¢þ
>WENV170626739
FUWD013229187
[FUWD] metagenome; unknown
3755
3680
-
Val
TAC
[ENA]
¢þ
>WENV170627000
FUWD013230668
[FUWD] metagenome; unknown
12852
12777
-
Val
TAC
[ENA]
¢þ
>WENV170627289
FUWD013232491
[FUWD] metagenome; unknown
25689
25764
+
Val
TAC
[ENA]
¢þ
>WENV170630232
FUWD013299512
[FUWD] metagenome; unknown
9055
8980
-
Val
TAC
[ENA]
¢þ
>WENV170631965
FUWD013374210
[FUWD] metagenome; unknown
15669
15594
-
Val
TAC
[ENA]
¢þ
>WENV170633001
FUWD013389886
[FUWD] metagenome; unknown
426
501
+
Val
TAC
[ENA]
¢þ
>WENV170948170
MEHZ011102078
[MEHZ] marine metagenome; marine surface water
176
101
-
Val
TAC
[ENA]
¢þ
>C181113418
CP025119
Bacteroidota
Polaribacter sp. ALD11 [CP025119]
1795444
1795367
-
Val
TAC
-
¡û
>C181113419
CP025119
Bacteroidota
Polaribacter sp. ALD11 [CP025119]
1795242
1795165
-
Val
TAC
-
¡û
>C181196554
CP031188
Bacteroidota
Flavobacterium arcticum SM1502 [CP031188]
2234483
2234558
+
Val
TAC
-
¡û
>C181196575
CP031188
Bacteroidota
Flavobacterium arcticum SM1502 [CP031188]
416811
416736
-
Val
TAC
-
¡û
>C191023114
CP022985
Bacteroidota
Mariniflexile sp. TRM1-10 [CP022985]
916492
916415
-
Val
TAC
-
¡û
>W141563397
JHZZ01000001
Bacteroidota
Polaribacter sp. Hel_I_88 [JHZZ]
2200148
2200223
+
Val
TAC
[ENA]
¡û
>W141807466
JPOL01000002
Bacteroidota
Flavimarina sp. Hel_I_48 MAR_2009_132 [JPOL]
2335635
2335712
+
Val
TAC
[ENA]
¡û
>W1910785549
MQUA01000013
Bacteroidota
Polaribacter filamentus ATCC 700397 [MQUA]
2279168
2279093
-
Val
TAC
[ENA]
¡û
>W1910796547
MSCK01000002
Bacteroidota
Polaribacter butkevichii KCTC 12100 [MSCK]
1118018
1118095
+
Val
TAC
[ENA]
¡û
>W1910796548
MSCK01000002
Bacteroidota
Polaribacter butkevichii KCTC 12100 [MSCK]
1145100
1145177
+
Val
TAC
[ENA]
¡û
>W1910796566
MSCL01000001
Bacteroidota
Polaribacter gangjinensis KCTC 22729 [MSCL]
21330
21405
+
Val
TAC
[ENA]
¡û
>W1910796602
MSCM01000001
Bacteroidota
Polaribacter glomeratus ATCC 43844 [MSCM]
20404
20481
+
Val
TAC
[ENA]
¡û
>W1911243280
NSGJ01000047
Bacteroidota
Myroides sp. N17-2 [NSGJ]
14209
14284
+
Val
TAC
[ENA]
¡û
>W1810173132
PJMV01000001
Bacteroidota
Polaribacter sp. Hel1_33_96 [PJMV]
2088536
2088461
-
Val
TAC
[ENA]
¡û
>W1511296861
JPDI01000001
Bacteroidota
Polaribacter sp. Hel1_33_49 [JPDI]
1252647
1252722
+
Val
TAC
[ENA]
¡û
>W1511576861
LAQB01000101
Bacteroidota
Polaribacter sp. ASP10-06a [LAQB]
175
100
-
Val
TAC
[ENA]
¡û
>W1610627140
LIDG01000129
Bacteroidota
Cryomorphaceae bacterium BACL22 MAG-120619-bin32 [LIDG]
2363
2288
-
Val
TAC
[ENA]
¡û
>W1610909729
LSFM01000021
Bacteroidota
Polaribacter vadi [LSFM]
58487
58564
+
Val
TAC
[ENA]
¡û
>W1610909730
LSFM01000021
Bacteroidota
Polaribacter vadi [LSFM]
58597
58672
+
Val
TAC
[ENA]
¡û
>W1610977591
LVWE01000010
Bacteroidota
Polaribacter atrinae [LVWE]
77711
77634
-
Val
TAC
[ENA]
¡û
>W1610977592
LVWE01000010
Bacteroidota
Polaribacter atrinae [LVWE]
77509
77432
-
Val
TAC
[ENA]
¡û
>WENV078047
AAFY01012943
Fossil microbial community from Whale Fall (Santa Cruz Basin)
223
146
-
Val
TAC
[ENA]
>W1710758267
LIDG01000129
Bacteroidota
Cryomorphaceae bacterium BACL22 MAG-120619-bin32 [LIDG]
2363
2288
-
Val
TAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK