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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.16293 (49 seq.)
>W1710777885
LJCE01000002
Gammaproteobacteria
Psychrobacter sp. P11F6 [LJCE]
87034
86944
-
Ser
TGA
[ENA]
¡û
>W1710777886
LJCE01000002
Gammaproteobacteria
Psychrobacter sp. P11F6 [LJCE]
86860
86770
-
Ser
TGA
[ENA]
¡û
>W1710777936
LJCF01000003
Gammaproteobacteria
Psychrobacter sp. P11G3 [LJCF]
36143
36053
-
Ser
TGA
[ENA]
¡û
>W1711303130
MAJM01000004
Gammaproteobacteria
Psychrobacter sp. B29-1 [MAJM]
526661
526571
-
Ser
TGA
[ENA]
¡û
>C015830
CP000082
Gammaproteobacteria
Psychrobacter arcticus 273-4 [CP000082]
1988031
1987941
-
Ser
TGA
[Ensembl]
¡û
>C015992
CP000323
Gammaproteobacteria
Psychrobacter cryohalolentis K5 [CP000323]
2272542
2272452
-
Ser
TGA
[Ensembl]
¡û
>WENV180101039
OAOU01000019
[OAOU] marine metagenome; ENVO:00002010 SEAWATER
18853
18763
-
Ser
TGA
[ENA]
¢þ
>WENV180101161
OAOU01002614
[OAOU] marine metagenome; ENVO:00002010 SEAWATER
1689
1599
-
Ser
TGA
[ENA]
¢þ
>w003227
AADI01000004
Gammaproteobacteria
Psychrobacter arcticus 273-4 [AADI]
80484
80392
-
Ser
TGA
[ENA]
¡û
>C08007227
CP000082
Gammaproteobacteria
Psychrobacter arcticus 273-4 [CP000082]
1988031
1987944
-
Ser
TGA
[Ensembl]
¡û
>W141233990
BAWG01000018
Gammaproteobacteria
Psychrobacter sp. JCM 18900 [BAWG]
9683
9773
+
Ser
TGA
[ENA]
¡û
>W141234046
BAWI01000002
Gammaproteobacteria
Psychrobacter sp. JCM 18902 [BAWI]
451521
451611
+
Ser
TGA
[ENA]
¡û
>W141234064
BAWI01000011
Gammaproteobacteria
Psychrobacter sp. JCM 18902 [BAWI]
86128
86038
-
Ser
TGA
[ENA]
¡û
>W141234092
BAWJ01000007
Gammaproteobacteria
Psychrobacter sp. JCM 18903 [BAWJ]
178
88
-
Ser
TGA
[ENA]
¡û
>W141234107
BAWJ01000017
Gammaproteobacteria
Psychrobacter sp. JCM 18903 [BAWJ]
71811
71721
-
Ser
TGA
[ENA]
¡û
>WENV182542192
OJAV01008242
[OJAV] seawater metagenome; Sea water
807
897
+
Ser
TGA
[ENA]
¢þ
>WENV182549817
OJBZ01000065
[OJBZ] seawater metagenome; Sea water
19281
19191
-
Ser
TGA
[ENA]
¢þ
>WENV182562315
OJDZ01000757
[OJDZ] seawater metagenome; Sea water
9230
9140
-
Ser
TGA
[ENA]
¢þ
>C181056069
CP022043
Gammaproteobacteria
Psychrobacter cryohalolentis FDAARGOS_308 [CP022043]
969966
969876
-
Ser
TGA
-
¡û
>W09103313
AAJC01000006
Gammaproteobacteria
Psychrobacter cryohalolentis K5 [AAJC]
33225
33315
+
Ser
TGA
[ENA]
¡û
>W1810155479
PJAS01000075
Gammaproteobacteria
Psychrobacter sp. 4Bb [PJAS]
87200
87290
+
Ser
TGA
[ENA]
¡û
>W1810155498
PJAT01000084
Gammaproteobacteria
Psychrobacter sp. 4Dc [PJAT]
16101
16191
+
Ser
TGA
[ENA]
¡û
>W1810156199
PJBD01000094
Gammaproteobacteria
Psychrobacter sp. Choline-02u-13 [PJBD]
957
867
-
Ser
TGA
[ENA]
¡û
>W1810156329
PJBF01000054
Gammaproteobacteria
Psychrobacter sp. Choline-02u-9 [PJBF]
58499
58589
+
Ser
TGA
[ENA]
¡û
>W1810156444
PJBH01000069
Gammaproteobacteria
Psychrobacter sp. Choline-3u-12 [PJBH]
58533
58623
+
Ser
TGA
[ENA]
¡û
>W1810157257
PJBU01000096
Gammaproteobacteria
Psychrobacter sp. MES7-P7E [PJBU]
28948
29038
+
Ser
TGA
[ENA]
¡û
>W1810596384
QGGM01000001
Gammaproteobacteria
Psychrobacter immobilis DSM 7229 [QGGM]
237377
237287
-
Ser
TGA
[ENA]
¡û
>W1810596385
QGGM01000001
Gammaproteobacteria
Psychrobacter immobilis DSM 7229 [QGGM]
237202
237112
-
Ser
TGA
[ENA]
¡û
>W1810671449
QJSU01000012
Gammaproteobacteria
Psychrobacter fozii CECT 5889 [QJSU]
93943
93853
-
Ser
TGA
[ENA]
¡û
>W1810671450
QJSU01000012
Gammaproteobacteria
Psychrobacter fozii CECT 5889 [QJSU]
93769
93679
-
Ser
TGA
[ENA]
¡û
>W1810692656
QLKS01000001
Gammaproteobacteria
Psychrobacter proteolyticus HAMBI_2948 [QLKS]
834118
834028
-
Ser
TGA
[ENA]
¡û
>W121043490
AHVZ01000006
Gammaproteobacteria
Psychrobacter sp. PAMC 21119 [AHVZ]
107816
107906
+
Ser
TGA
[ENA]
¡û
>W121043491
AHVZ01000006
Gammaproteobacteria
Psychrobacter sp. PAMC 21119 [AHVZ]
107990
108080
+
Ser
TGA
[ENA]
¡û
>W1610112394
CZJV02000088
Gammaproteobacteria
Psychrobacter cibarius [CZJV]
108584
108674
+
Ser
TGA
[ENA]
¡û
>W1610112395
CZJV02000088
Gammaproteobacteria
Psychrobacter cibarius [CZJV]
108758
108848
+
Ser
TGA
[ENA]
¡û
>C131017402
CP006265
Gammaproteobacteria
Psychrobacter sp. G [CP006265]
2308000
2307910
-
Ser
TGA
[Ensembl]
¡û
>W1610632745
LIQB01000006
Gammaproteobacteria
Psychrobacter glacincola [LIQB]
98778
98688
-
Ser
TGA
[ENA]
¡û
>W1610632746
LIQB01000006
Gammaproteobacteria
Psychrobacter glacincola [LIQB]
98669
98579
-
Ser
TGA
[ENA]
¡û
>W1610632760
LIQB01000016
Gammaproteobacteria
Psychrobacter glacincola [LIQB]
9
99
+
Ser
TGA
[ENA]
¡û
>W1610632761
LIQB01000016
Gammaproteobacteria
Psychrobacter glacincola [LIQB]
183
273
+
Ser
TGA
[ENA]
¡û
>W1610642071
LJCE01000002
Gammaproteobacteria
Psychrobacter sp. P11F6 [LJCE]
87034
86944
-
Ser
TGA
[ENA]
¡û
>W1610642072
LJCE01000002
Gammaproteobacteria
Psychrobacter sp. P11F6 [LJCE]
86860
86770
-
Ser
TGA
[ENA]
¡û
>W1610642122
LJCF01000003
Gammaproteobacteria
Psychrobacter sp. P11G3 [LJCF]
36143
36053
-
Ser
TGA
[ENA]
¡û
>W1710115098
CZJV02000088
Gammaproteobacteria
Psychrobacter cibarius [CZJV]
108584
108674
+
Ser
TGA
[ENA]
¡û
>W1710115099
CZJV02000088
Gammaproteobacteria
Psychrobacter cibarius [CZJV]
108758
108848
+
Ser
TGA
[ENA]
¡û
>W1710767177
LIQB01000006
Gammaproteobacteria
Psychrobacter glacincola [LIQB]
98778
98688
-
Ser
TGA
[ENA]
¡û
>W1710767178
LIQB01000006
Gammaproteobacteria
Psychrobacter glacincola [LIQB]
98669
98579
-
Ser
TGA
[ENA]
¡û
>W1710767192
LIQB01000016
Gammaproteobacteria
Psychrobacter glacincola [LIQB]
9
99
+
Ser
TGA
[ENA]
¡û
>W1710767193
LIQB01000016
Gammaproteobacteria
Psychrobacter glacincola [LIQB]
183
273
+
Ser
TGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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