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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.163397 (24 seq.)
>W1711188767
LWQT01000010
Alphaproteobacteria
Paramagnetospirillum marisnigri [LWQT]
51639
51715
+
Pro
TGG
[ENA]
¡û
>C171041993
CP015848
Alphaproteobacteria
Magnetospirillum sp. ME-1 [CP015848]
531766
531690
-
Pro
TGG
-
¡û
>C013734
AP007255
Alphaproteobacteria
Magnetospirillum magneticum AMB-1 [AP007255]
960223
960299
+
Pro
TGG
[Ensembl]
¡û
>WENV180266068
OBEQ011717729
[OBEQ] groundwater metagenome; groundwater
1952
2028
+
Pro
TGG
[ENA]
¢þ
>WENV180343434
OBLK01016208
[OBLK] soil metagenome; Clay
417
493
+
Pro
TGG
[ENA]
¢þ
>WENV180353599
OBLQ010900633
[OBLQ] soil metagenome; soil
155
79
-
Pro
TGG
[ENA]
¢þ
>w001875
AAAP01003875
Alphaproteobacteria
Paramagnetospirillum magnetotacticum [AAAP]
2518
2440
-
Pro
TGG
[ENA]
¡û
>WENV181296507
OFHJ01047265
[OFHJ] soil metagenome; Clay
415
339
-
Pro
TGG
[ENA]
¢þ
>WENV181379061
OFRC01014497
[OFRC] wastewater metagenome; Exp Tend CN 10WW
973
1049
+
Pro
TGG
[ENA]
¢þ
>WENV183681407
ORMF010301777
[ORMF] groundwater metagenome; groundwater
27
103
+
Pro
TGG
[ENA]
¢þ
>WENV183686460
ORMF011005289
[ORMF] groundwater metagenome; groundwater
23957
24033
+
Pro
TGG
[ENA]
¢þ
>WENV170555218
CXWK01098851
[CXWK] wastewater metagenome; activated sludge
935
859
-
Pro
TGG
[ENA]
¢þ
>WENV170711918
LNFM01008344
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
1419
1495
+
Pro
TGG
[ENA]
¢þ
>WENV170963680
MRWG01000500
[MRWG] biofilm metagenome; microbial consortium enriched at the cathode of a solar microbial fuel cell
42926
43002
+
Pro
TGG
[ENA]
¢þ
>WENV170964580
MRWG01020862
[MRWG] biofilm metagenome; microbial consortium enriched at the cathode of a solar microbial fuel cell
1238
1162
-
Pro
TGG
[ENA]
¢þ
>WENV170964662
MRWG01028260
[MRWG] biofilm metagenome; microbial consortium enriched at the cathode of a solar microbial fuel cell
10
86
+
Pro
TGG
[ENA]
¢þ
>W1910498965
FXXN01000022
Alphaproteobacteria
Magnetospirillum sp. 15-1 [FXXN]
82450
82374
-
Pro
TGG
[ENA]
¡û
>W1911497414
OCNJ01000020
Alphaproteobacteria
Caenispirillum bisanense USBA 140 [OCNJ]
1380
1304
-
Pro
TGG
[ENA]
¡û
>W1810101816
PGTO01000016
Alphaproteobacteria
Paramagnetospirillum kuznetsovii LBB-42 [PGTO]
76290
76214
-
Pro
TGG
[ENA]
¡û
>C151099596
HE663493
Alphaproteobacteria
Pararhodospirillum photometricum DSM 122 [HE663493]
2115399
2115323
-
Pro
TGG
[Ensembl]
¡û
>C151101068
HG794546
Alphaproteobacteria
Magnetospirillum gryphiswaldense MSR-1 v2 [HG794546]
2271564
2271488
-
Pro
TGG
[Ensembl]
¡û
>W1511510918
JXSL01000030
Alphaproteobacteria
Paramagnetospirillum magnetotacticum MS-1 [JXSL]
8142
8066
-
Pro
TGG
[ENA]
¡û
>C161108390
LN997848
Alphaproteobacteria
Magnetospirillum sp. XM-1 [LN997848]
4653483
4653407
-
Pro
TGG
-
¡û
>W1610990886
LWQT01000010
Alphaproteobacteria
Paramagnetospirillum marisnigri [LWQT]
51639
51715
+
Pro
TGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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