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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.163436 (8 seq.)
>WENV170172395
CEOQ01115068
[CEOQ] marine metagenome genome assembly TARA_034_DCM_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
50
127
+
Met
CAT
[ENA]
¢þ
>WENV170742317
LULU01010699
[LULU] marine metagenome; Red Sea water column Station 108 - depth 50m
1004
1081
+
Met
CAT
[ENA]
¢þ
>WENV170743052
LULV01007360
[LULV] marine metagenome; Red Sea water column Station 108 - depth 25m
294
217
-
Met
CAT
[ENA]
¢þ
>WENV170743762
LULW01003079
[LULW] marine metagenome; Red Sea water column Station 108 - depth 10m
253
176
-
Met
CAT
[ENA]
¢þ
>WENV170747064
LUMB01010159
[LUMB] marine metagenome; Red Sea water column Station 91 - depth 25m
534
611
+
Met
CAT
[ENA]
¢þ
>WENV170750897
LUMH01004276
[LUMH] marine metagenome; Red Sea water column Station 34 - depth 25m
1159
1082
-
Met
CAT
[ENA]
¢þ
>WENV170754587
LUML01024958
[LUML] marine metagenome; Red Sea water column Station 22 - depth 10m
512
435
-
Met
CAT
[ENA]
¢þ
>WENV170755809
LUMN01025792
[LUMN] marine metagenome; Red Sea water column Station 22 - depth 25m
356
433
+
Met
CAT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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