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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.163551 (69 seq.)
>W1711027057
LRDC01000009
Gammaproteobacteria
Shewanella frigidimarina [LRDC]
76400
76324
-
Met
CAT
[ENA]
¡û
>W1711027061
LRDC01000009
Gammaproteobacteria
Shewanella frigidimarina [LRDC]
75970
75894
-
Met
CAT
[ENA]
¡û
>W1711624496
MPHJ01000026
Gammaproteobacteria
Shewanella sp. UCD-KL12 [MPHJ]
2191
2115
-
Met
CAT
[ENA]
¡û
>W1711624500
MPHJ01000026
Gammaproteobacteria
Shewanella sp. UCD-KL12 [MPHJ]
1568
1492
-
Met
CAT
[ENA]
¡û
>W1711624624
MPHK01000029
Gammaproteobacteria
Shewanella sp. UCD-KL21 [MPHK]
32335
32411
+
Met
CAT
[ENA]
¡û
>W1711624628
MPHK01000029
Gammaproteobacteria
Shewanella sp. UCD-KL21 [MPHK]
32848
32924
+
Met
CAT
[ENA]
¡û
>W1712080445
NGZL01000016
Gammaproteobacteria
Shewanella putrefaciens [NGZL]
76
1
-
Met
CAT
[ENA]
¡û
>W1712080446
NGZL01000024
Gammaproteobacteria
Shewanella putrefaciens [NGZL]
62331
62255
-
Met
CAT
[ENA]
¡û
>W1712080449
NGZL01000024
Gammaproteobacteria
Shewanella putrefaciens [NGZL]
61990
61914
-
Met
CAT
[ENA]
¡û
>C020918
CP000302
Gammaproteobacteria
Shewanella denitrificans OS217 [CP000302]
939527
939603
+
Met
CAT
[Ensembl]
¡û
>C021945
CP000447
Gammaproteobacteria
Shewanella frigidimarina NCIMB 400 [CP000447]
843284
843360
+
Met
CAT
[Ensembl]
¡û
>C022923
AE014299
Gammaproteobacteria
Shewanella oneidensis MR-1 [AE014299]
1229974
1230050
+
Met
CAT
[Ensembl]
¡û
>C023286
CP000681
Gammaproteobacteria
Shewanella putrefaciens [CP000681]
3312735
3312659
-
Met
CAT
[Ensembl]
¡û
>w028547
ABDD01000024
Gammaproteobacteria
Shewanella sediminis HAW-EB3 [ABDD]
76828
76750
-
Met
CAT
[ENA]
¡û
>w020037
AAUO01000076
Gammaproteobacteria
Shewanella woodyi ATCC 51908 [AAUO]
238
316
+
Met
CAT
[ENA]
¡û
>C171033383
CP014782
Gammaproteobacteria
Shewanella psychrophila WP2 [CP014782]
4945631
4945555
-
Met
CAT
-
¡û
>C171033387
CP014782
Gammaproteobacteria
Shewanella psychrophila WP2 [CP014782]
4945088
4945012
-
Met
CAT
-
¡û
>W08005708
ABIC01000080
Gammaproteobacteria
Shewanella benthica KT99 [ABIC]
4259
4335
+
Met
CAT
[ENA]
¡û
>W08005718
ABIC01000090
Gammaproteobacteria
Shewanella benthica KT99 [ABIC]
2219
2146
-
Met
CAT
[ENA]
¡û
>C08010578
CP000821
Gammaproteobacteria
Shewanella sediminis HAW-EB3 [CP000821]
4221777
4221704
-
Met
CAT
[Ensembl]
¡û
>C08010581
CP000821
Gammaproteobacteria
Shewanella sediminis HAW-EB3 [CP000821]
4221352
4221279
-
Met
CAT
[Ensembl]
¡û
>WENV182556855
OJDH01000346
[OJDH] seawater metagenome; Sea water
440
364
-
Met
CAT
[ENA]
¢þ
>WENV182580323
OJGV01002282
[OJGV] seawater metagenome; Sea water
194
118
-
Met
CAT
[ENA]
¢þ
>C08010774
CP000961
Gammaproteobacteria
Shewanella woodyi ATCC 51908 [CP000961]
4497202
4497129
-
Met
CAT
[Ensembl]
¡û
>C08010777
CP000961
Gammaproteobacteria
Shewanella woodyi ATCC 51908 [CP000961]
4496703
4496630
-
Met
CAT
[Ensembl]
¡û
>WENV170022233
BCQK01002501
[BCQK] museum specimen metagenome; Liagora japonica specimen isolated from Nada, Gobou, Wakayama
2078
2154
+
Met
CAT
[ENA]
¢þ
>WENV170022237
BCQK01002501
[BCQK] museum specimen metagenome; Liagora japonica specimen isolated from Nada, Gobou, Wakayama
2510
2586
+
Met
CAT
[ENA]
¢þ
>C181075004
CP023019
Gammaproteobacteria
Shewanella sp. WE21 [CP023019]
3108669
3108745
+
Met
CAT
-
¡û
>C181075008
CP023019
Gammaproteobacteria
Shewanella sp. WE21 [CP023019]
3109160
3109236
+
Met
CAT
-
¡û
>C181214198
LS483452
Gammaproteobacteria
Shewanella benthica DB21MT-2 [LS483452]
3868855
3868779
-
Met
CAT
-
¡û
>C181214202
LS483452
Gammaproteobacteria
Shewanella benthica DB21MT-2 [LS483452]
3868151
3868075
-
Met
CAT
-
¡û
>C191117228
CP034015
Gammaproteobacteria
Shewanella livingstonensis LMG 19866 [CP034015]
4091234
4091158
-
Met
CAT
-
¡û
>C191117232
CP034015
Gammaproteobacteria
Shewanella livingstonensis LMG 19866 [CP034015]
4090804
4090728
-
Met
CAT
-
¡û
>C191148760
CP036200
Gammaproteobacteria
Shewanella maritima D4-2 [CP036200]
1429391
1429315
-
Met
CAT
-
¡û
>C191148764
CP036200
Gammaproteobacteria
Shewanella maritima D4-2 [CP036200]
1428892
1428816
-
Met
CAT
-
¡û
>C191156020
CP037952
Gammaproteobacteria
Parashewanella spongiae HJ039 [CP037952]
4360981
4360905
-
Met
CAT
-
¡û
>C191156024
CP037952
Gammaproteobacteria
Parashewanella spongiae HJ039 [CP037952]
4360562
4360486
-
Met
CAT
-
¡û
>C191173242
CP039928
Gammaproteobacteria
Shewanella sp. MEBiC00475 [CP039928]
1224874
1224798
-
Met
CAT
-
¡û
>C191173246
CP039928
Gammaproteobacteria
Shewanella sp. MEBiC00475 [CP039928]
1224444
1224368
-
Met
CAT
-
¡û
>C191185831
CP041036
Gammaproteobacteria
Shewanella polaris SM1901 [CP041036]
907169
907245
+
Met
CAT
-
¡û
>C191185835
CP041036
Gammaproteobacteria
Shewanella polaris SM1901 [CP041036]
907599
907675
+
Met
CAT
-
¡û
>W09103091
AAIV01000005
Gammaproteobacteria
Shewanella frigidimarina NCIMB 400 [AAIV]
210387
210311
-
Met
CAT
[ENA]
¡û
>W1910676763
MCTV01000057
Gammaproteobacteria
Shewanella sp. 10N.286.52.C2 [MCTV]
141776
141851
+
Met
CAT
[ENA]
¡û
>W1910676767
MCTV01000057
Gammaproteobacteria
Shewanella sp. 10N.286.52.C2 [MCTV]
142289
142365
+
Met
CAT
[ENA]
¡û
>W1910676970
MCTY01000215
Gammaproteobacteria
Shewanella sp. 10N.286.52.B9 [MCTY]
25035
24959
-
Met
CAT
[ENA]
¡û
>W1910676974
MCTY01000215
Gammaproteobacteria
Shewanella sp. 10N.286.52.B9 [MCTY]
24522
24446
-
Met
CAT
[ENA]
¡û
>W1910679503
MCVG01000115
Gammaproteobacteria
Shewanella sp. 10N.286.48.B5 [MCVG]
146288
146212
-
Met
CAT
[ENA]
¡û
>W1910679507
MCVG01000115
Gammaproteobacteria
Shewanella sp. 10N.286.48.B5 [MCVG]
145775
145699
-
Met
CAT
[ENA]
¡û
>W1910679688
MCVI01000072
Gammaproteobacteria
Shewanella sp. 10N.286.48.A6 [MCVI]
140818
140894
+
Met
CAT
[ENA]
¡û
>W1910679692
MCVI01000072
Gammaproteobacteria
Shewanella sp. 10N.286.48.A6 [MCVI]
141331
141407
+
Met
CAT
[ENA]
¡û
>W1911809451
QYYH01000019
Gammaproteobacteria
Parashewanella spongiae KCTC 22492 [QYYH]
51406
51482
+
Met
CAT
[ENA]
¡û
>W1911809455
QYYH01000019
Gammaproteobacteria
Parashewanella spongiae KCTC 22492 [QYYH]
51825
51901
+
Met
CAT
[ENA]
¡û
>W1810073429
PEGD01000002
Gammaproteobacteria
Shewanella xiamenensis AS58 [PEGD]
260210
260134
-
Met
CAT
[ENA]
¡û
>W1810073433
PEGD01000002
Gammaproteobacteria
Shewanella xiamenensis AS58 [PEGD]
259776
259700
-
Met
CAT
[ENA]
¡û
>W1810155308
PJAP01000734
Gammaproteobacteria
Shewanella sp. 11B5 [PJAP]
728
652
-
Met
CAT
[ENA]
¡û
>W1810157816
PJCD01000044
Gammaproteobacteria
Shewanella sp. ALD9 [PJCD]
27341
27417
+
Met
CAT
[ENA]
¡û
>W1810157857
PJCE01000001
Gammaproteobacteria
Shewanella sp. Actino-trap-3 [PJCE]
4224677
4224753
+
Met
CAT
[ENA]
¡û
>C10112875
AP011177
Gammaproteobacteria
Shewanella violacea DSS12 [AP011177]
3837952
3837876
-
Met
CAT
[Ensembl]
¡û
>C10112879
AP011177
Gammaproteobacteria
Shewanella violacea DSS12 [AP011177]
3837390
3837314
-
Met
CAT
[Ensembl]
¡û
>W1610072055
BCUO01000005
Gammaproteobacteria
Shewanella putrefaciens JCM 20190 = NBRC 3908 [BCUO]
23595
23671
+
Met
CAT
[ENA]
¡û
>W1610072059
BCUO01000005
Gammaproteobacteria
Shewanella putrefaciens JCM 20190 = NBRC 3908 [BCUO]
24049
24125
+
Met
CAT
[ENA]
¡û
>W1610460579
FKJK01000004
Gammaproteobacteria
Shewanella woodyi Alg231_23 [FKJK]
414075
413999
-
Met
CAT
[ENA]
¡û
>W1610460582
FKJK01000004
Gammaproteobacteria
Shewanella woodyi Alg231_23 [FKJK]
413576
413500
-
Met
CAT
[ENA]
¡û
>W1610875169
LRDC01000009
Gammaproteobacteria
Shewanella frigidimarina [LRDC]
76400
76324
-
Met
CAT
[ENA]
¡û
>W1610875173
LRDC01000009
Gammaproteobacteria
Shewanella frigidimarina [LRDC]
75970
75894
-
Met
CAT
[ENA]
¡û
>W1710069257
BCUO01000005
Gammaproteobacteria
Shewanella putrefaciens JCM 20190 = NBRC 3908 [BCUO]
23595
23671
+
Met
CAT
[ENA]
¡û
>W1710069261
BCUO01000005
Gammaproteobacteria
Shewanella putrefaciens JCM 20190 = NBRC 3908 [BCUO]
24049
24125
+
Met
CAT
[ENA]
¡û
>W1710460143
FKJK01000004
Gammaproteobacteria
Shewanella woodyi Alg231_23 [FKJK]
414075
413999
-
Met
CAT
[ENA]
¡û
>W1710460146
FKJK01000004
Gammaproteobacteria
Shewanella woodyi Alg231_23 [FKJK]
413576
413500
-
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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