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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.163641 (17 seq.)
>W131159434
AQVB01000002
Betaproteobacteria
Oligella urethralis DSM 7531 [AQVB]
115837
115914
+
Arg
ACG
[ENA]
¡û
>W131159443
AQVB01000005
Betaproteobacteria
Oligella urethralis DSM 7531 [AQVB]
50362
50439
+
Arg
ACG
[ENA]
¡û
>W1711116057
LUAS01000004
Betaproteobacteria
Oligella sp. HMSC09E12 [LUAS]
40416
40339
-
Arg
ACG
[ENA]
¡û
>W1711116085
LUAS01000103
Betaproteobacteria
Oligella sp. HMSC09E12 [LUAS]
9145
9222
+
Arg
ACG
[ENA]
¡û
>W1711185166
LWNE01000029
Betaproteobacteria
Oligella sp. HMSC05A10 [LWNE]
59799
59722
-
Arg
ACG
[ENA]
¡û
>W1711185192
LWNE01000124
Betaproteobacteria
Oligella sp. HMSC05A10 [LWNE]
64089
64166
+
Arg
ACG
[ENA]
¡û
>WENV170720168
LSQX01143716
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
128
205
+
Arg
ACG
[ENA]
¢þ
>WENV170720498
LSQX01155490
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
10163
10086
-
Arg
ACG
[ENA]
¢þ
>C181152575
CP027417
Betaproteobacteria
Oligella urethralis FDAARGOS_329 [CP027417]
851022
851099
+
Arg
ACG
-
¡û
>C181152577
CP027417
Betaproteobacteria
Oligella urethralis FDAARGOS_329 [CP027417]
1545950
1546027
+
Arg
ACG
-
¡û
>W1911595538
PNGK01000007
Betaproteobacteria
Oligella urethralis UMB0345 [PNGK]
50238
50315
+
Arg
ACG
[ENA]
¡û
>W1911595542
PNGK01000008
Betaproteobacteria
Oligella urethralis UMB0345 [PNGK]
33076
33153
+
Arg
ACG
[ENA]
¡û
>W1511351531
JRNI01000015
Betaproteobacteria
Oligella urethralis DNF00040 [JRNI]
59778
59701
-
Arg
ACG
[ENA]
¡û
>W1511351537
JRNI01000017
Betaproteobacteria
Oligella urethralis DNF00040 [JRNI]
44512
44435
-
Arg
ACG
[ENA]
¡û
>W1511458954
JVJW01000112
Betaproteobacteria
Oligella urethralis 368_TASI [JVJW]
75616
75693
+
Arg
ACG
[ENA]
¡û
>W1511461240
JVMH01000070
Betaproteobacteria
Oligella urethralis 303_AMIM [JVMH]
21752
21829
+
Arg
ACG
[ENA]
¡û
>W1511461276
JVMH01000139
Betaproteobacteria
Oligella urethralis 303_AMIM [JVMH]
45301
45224
-
Arg
ACG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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