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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.163660 (5 seq.)
>WENV180048272
MPLT02325896
[MPLT] marine metagenome; 70 m water sample filtered on 0.2 um supor filter
465
540
+
Val
AAC
[ENA]
¢þ
>WENV180048281
MPLT02327157
[MPLT] marine metagenome; 70 m water sample filtered on 0.2 um supor filter
430
355
-
Val
AAC
[ENA]
¢þ
>WENV180049766
MPLU02083790
[MPLU] marine metagenome; 90 m water sample filtered on 0.2 um supor filter
682
607
-
Val
AAC
[ENA]
¢þ
>WENV180052620
MPLU02312734
[MPLU] marine metagenome; 90 m water sample filtered on 0.2 um supor filter
587
662
+
Val
AAC
[ENA]
¢þ
>WENV180054199
MPLV02074433
[MPLV] marine metagenome; 100 m water sample filtered on 0.2 um supor filter
249
324
+
Val
AAC
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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