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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
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1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.163757 (72 seq.)
>W1711144461
LVIE01000167
Gammaproteobacteria
Providencia stuartii [LVIE]
15672
15596
-
Pro
GGG
[ENA]
¡û
>W1711233536
LYBX01000008
Gammaproteobacteria
Providencia rettgeri [LYBX]
475202
475126
-
Pro
GGG
[ENA]
¡û
>W1711233553
LYBX01000010
Gammaproteobacteria
Providencia rettgeri [LYBX]
941603
941527
-
Pro
GGG
[ENA]
¡û
>W1711327256
MBJU01000001
Gammaproteobacteria
Photorhabdus temperata [MBJU]
305
229
-
Pro
GGG
[ENA]
¡û
>W1711487886
MKGR01000002
Gammaproteobacteria
Xenorhabdus thuongxuanensis 30TX1 [MKGR]
206993
206917
-
Pro
GGG
[ENA]
¡û
>C171046408
CP016176
Gammaproteobacteria
Xenorhabdus hominickii ANU1 [CP016176]
1673808
1673884
+
Pro
GGG
-
¡û
>C171065741
CP017671
Gammaproteobacteria
Providencia rettgeri RB151 [CP017671]
2814746
2814822
+
Pro
GGG
-
¡û
>W141022167
AJSB01000007
Gammaproteobacteria
Providencia rettgeri Dmel1 [AJSB]
123745
123821
+
Pro
GGG
[ENA]
¡û
>W141024298
AKKL01000012
Gammaproteobacteria
Providencia burhodogranariea DSM 19968 [AKKL]
179402
179326
-
Pro
GGG
[ENA]
¡û
>W141090715
AUXQ01000028
Gammaproteobacteria
Photorhabdus temperata subsp. temperata M1021 [AUXQ]
56312
56236
-
Pro
GGG
[ENA]
¡û
>W141153918
AXDT01000134
Gammaproteobacteria
Photorhabdus temperata J3 [AXDT]
2654
2578
-
Pro
GGG
[ENA]
¡û
>W141193822
AYSJ01000014
Gammaproteobacteria
Photorhabdus khanii subsp. khanii NC19 [AYSJ]
389942
389866
-
Pro
GGG
[ENA]
¡û
>W141254019
CBST010000123
Gammaproteobacteria
Xenorhabdus bovienii str. feltiae France [CBST]
51055
51131
+
Pro
GGG
[ENA]
¡û
>W141254095
CBSU010000197
Gammaproteobacteria
Xenorhabdus bovienii str. feltiae Florida [CBSU]
26072
26148
+
Pro
GGG
[ENA]
¡û
>W141254154
CBSV010000183
Gammaproteobacteria
Xenorhabdus bovienii str. feltiae Moldova [CBSV]
10764
10840
+
Pro
GGG
[ENA]
¡û
>W141254211
CBSW010000190
Gammaproteobacteria
Xenorhabdus bovienii str. puntauvense [CBSW]
169098
169174
+
Pro
GGG
[ENA]
¡û
>W141254264
CBSX010000114
Gammaproteobacteria
Xenorhabdus bovienii str. oregonense [CBSX]
43633
43709
+
Pro
GGG
[ENA]
¡û
>W141254321
CBSY010000096
Gammaproteobacteria
Xenorhabdus bovienii str. kraussei Quebec [CBSY]
73051
73127
+
Pro
GGG
[ENA]
¡û
>W141254430
CBSZ010000378
Gammaproteobacteria
Xenorhabdus bovienii str. kraussei Becker Underwood [CBSZ]
40090
40014
-
Pro
GGG
[ENA]
¡û
>W141254460
CBTA010000063
Gammaproteobacteria
Xenorhabdus bovienii str. Jollieti [CBTA]
74754
74830
+
Pro
GGG
[ENA]
¡û
>W141254564
CBTB010000220
Gammaproteobacteria
Xenorhabdus bovienii str. Intermedium [CBTB]
19923
19999
+
Pro
GGG
[ENA]
¡û
>W141258408
CBXE010000028
Gammaproteobacteria
Xenorhabdus cabanillasii JM26 [CBXE]
50174
50250
+
Pro
GGG
[ENA]
¡û
>W141258453
CBXF010000075
Gammaproteobacteria
Xenorhabdus szentirmaii DSM 16338 [CBXF]
86
10
-
Pro
GGG
[ENA]
¡û
>WENV182621810
OJKJ01001082
[OJKJ] metagenome; faeces
3283
3207
-
Pro
GGG
[ENA]
¢þ
>WENV170657206
JTFO01102273
[JTFO] activated sludge metagenome; CETP activated sludge from laboratory augmented bioreactor treating industrial wastewater
383
459
+
Pro
GGG
[ENA]
¢þ
>C181152638
CP027418
Gammaproteobacteria
Providencia rettgeri FDAARGOS_330 [CP027418]
4044283
4044359
+
Pro
GGG
-
¡û
>C181184438
CP029736
Gammaproteobacteria
Providencia rettgeri AR_0082 [CP029736]
3182242
3182318
+
Pro
GGG
-
¡û
>C181195890
CP031123
Gammaproteobacteria
Providencia huaxiensis WCHPr000369 [CP031123]
377137
377061
-
Pro
GGG
-
¡û
>C181212428
LS483422
Gammaproteobacteria
Providencia heimbachae NCTC12003 [LS483422]
1849542
1849466
-
Pro
GGG
-
¡û
>C191057286
CP028384
Gammaproteobacteria
Providencia heimbachae 99101 [CP028384]
1801441
1801365
-
Pro
GGG
-
¡û
>C191172047
CP039844
Gammaproteobacteria
Providencia rettgeri Pr-15-2-50 [CP039844]
2070737
2070661
-
Pro
GGG
-
¡û
>W1910918767
NIBS01000002
Gammaproteobacteria
Xenorhabdus budapestensis DSM 16342 [NIBS]
228841
228917
+
Pro
GGG
[ENA]
¡û
>W1910918830
NIBT01000003
Gammaproteobacteria
Xenorhabdus ehlersii DSM 16337 [NIBT]
291672
291748
+
Pro
GGG
[ENA]
¡û
>W1910919034
NIBV01000002
Gammaproteobacteria
Xenorhabdus szentirmaii DSM 16338 [NIBV]
886732
886656
-
Pro
GGG
[ENA]
¡û
>W1910932800
NIUA01000001
Gammaproteobacteria
Xenorhabdus szentirmaii US123 [NIUA]
1511011
1511087
+
Pro
GGG
[ENA]
¡û
>W1910939846
NJAI01000002
Gammaproteobacteria
Xenorhabdus hominickii DSM 17903 [NJAI]
584816
584740
-
Pro
GGG
[ENA]
¡û
>W1910939991
NJAK01000001
Gammaproteobacteria
Xenorhabdus ishibashii DSM 22670 [NJAK]
3064550
3064474
-
Pro
GGG
[ENA]
¡û
>W1910942220
NJGH01000014
Gammaproteobacteria
Xenorhabdus cabanillasii JM26 [NJGH]
48531
48455
-
Pro
GGG
[ENA]
¡û
>W1911071397
NMQR01000015
Gammaproteobacteria
Photorhabdus sp. CRCIA-P01 [NMQR]
100196
100272
+
Pro
GGG
[ENA]
¡û
>W1911137324
NOWC01000001
Gammaproteobacteria
Providencia rettgeri PR1 [NOWC]
30706
30630
-
Pro
GGG
[ENA]
¡û
>W1911238176
NSCJ01000021
Gammaproteobacteria
Photorhabdus sp. S10-54 [NSCJ]
59463
59539
+
Pro
GGG
[ENA]
¡û
>W1911238257
NSCK01000029
Gammaproteobacteria
Photorhabdus sp. S9-53 [NSCK]
59471
59547
+
Pro
GGG
[ENA]
¡û
>W1911238327
NSCL01000029
Gammaproteobacteria
Photorhabdus sp. S8-52 [NSCL]
59471
59547
+
Pro
GGG
[ENA]
¡û
>W1911238348
NSCM01000002
Gammaproteobacteria
Photorhabdus bodei LJ24-63 [NSCM]
180616
180540
-
Pro
GGG
[ENA]
¡û
>W1911238438
NSCN01000011
Gammaproteobacteria
Photorhabdus sp. HUG-39 [NSCN]
60529
60605
+
Pro
GGG
[ENA]
¡û
>W1911429420
NXKD01000006
Gammaproteobacteria
Providencia rettgeri PR002 [NXKD]
32955
32879
-
Pro
GGG
[ENA]
¡û
>W1911632402
PUJY01000004
Gammaproteobacteria
Photorhabdus khanii MEX20-17 [PUJY]
129395
129319
-
Pro
GGG
[ENA]
¡û
>W1911744535
QVPC01000002
Gammaproteobacteria
Providencia rettgeri DCX [QVPC]
865994
866070
+
Pro
GGG
[ENA]
¡û
>W1810014968
BGMI01000002
Gammaproteobacteria
Providencia rettgeri TUM9994 [BGMI]
424478
424402
-
Pro
GGG
[ENA]
¡û
>W1810339366
PUWT01000014
Gammaproteobacteria
Photorhabdus hindustanensis H1 [PUWT]
59978
60054
+
Pro
GGG
[ENA]
¡û
>W1810339588
PUWW01000095
Gammaproteobacteria
Photorhabdus luminescens H5 [PUWW]
7869
7793
-
Pro
GGG
[ENA]
¡û
>W1810678902
QKNQ01000001
Gammaproteobacteria
Providencia rettgeri Pret_2032 [QKNQ]
2358049
2358125
+
Pro
GGG
[ENA]
¡û
>W1810861753
QTUB01000001
Gammaproteobacteria
Xenorhabdus cabanillasii DSM 17905 [QTUB]
2718020
2717944
-
Pro
GGG
[ENA]
¡û
>W1810869929
QUAF01000002
Gammaproteobacteria
Providencia rettgeri NVIT03 [QUAF]
398554
398630
+
Pro
GGG
[ENA]
¡û
>C151076906
CP011104
Gammaproteobacteria
Photorhabdus thracensis DSM 15199 [CP011104]
3917975
3917899
-
Pro
GGG
[Ensembl]
¡û
>C151098336
FO818637
Gammaproteobacteria
Xenorhabdus bovienii CS03 [FO818637]
2407481
2407557
+
Pro
GGG
[Ensembl]
¡û
>C10114147
FN667741
Gammaproteobacteria
Xenorhabdus bovienii SS-2004 [FN667741]
2851021
2851097
+
Pro
GGG
[Ensembl]
¡û
>W1510642726
CVLT01000042
Gammaproteobacteria
Providencia rettgeri H1736 [CVLT]
9000
9076
+
Pro
GGG
[ENA]
¡û
>W1511365734
JSEQ01000001
Gammaproteobacteria
Providencia rettgeri CCBH11880 [JSEQ]
83567
83491
-
Pro
GGG
[ENA]
¡û
>W1511401201
JTHJ02000271
Gammaproteobacteria
Photorhabdus luminescens NBAII HiPL101 [JTHJ]
34021
34097
+
Pro
GGG
[ENA]
¡û
>W1511510851
JXSK01000008
Gammaproteobacteria
Photorhabdus luminescens subsp. luminescens DSM 3368 [JXSK]
75393
75469
+
Pro
GGG
[ENA]
¡û
>W1511638065
LDNM01000038
Gammaproteobacteria
Xenorhabdus griffiniae BMMCB [LDNM]
34849
34925
+
Pro
GGG
[ENA]
¡û
>W1511638712
LDOF01000035
Gammaproteobacteria
Moellerella wisconsensis GTA-1455 [LDOF]
3525
3449
-
Pro
GGG
[ENA]
¡û
>W1610032504
AZAB02000028
Gammaproteobacteria
Photorhabdus luminescens NBAII H75HRPL105 [AZAB]
34016
34092
+
Pro
GGG
[ENA]
¡û
>W1610419495
FIZD01000008
Gammaproteobacteria
Providencia heimbachae [FIZD]
1232618
1232694
+
Pro
GGG
[ENA]
¡û
>W1610994934
LXEW01000051
Gammaproteobacteria
Providencia heimbachae ATCC 35613 [LXEW]
16540
16464
-
Pro
GGG
[ENA]
¡û
>W1611014089
LYBX01000008
Gammaproteobacteria
Providencia rettgeri [LYBX]
475202
475126
-
Pro
GGG
[ENA]
¡û
>W1611014106
LYBX01000010
Gammaproteobacteria
Providencia rettgeri [LYBX]
941603
941527
-
Pro
GGG
[ENA]
¡û
>W1710419231
FIZD01000008
Gammaproteobacteria
Providencia heimbachae [FIZD]
1232618
1232694
+
Pro
GGG
[ENA]
¡û
>W1710508748
FMWJ01000027
Gammaproteobacteria
Photorhabdus luminescens [FMWJ]
385
309
-
Pro
GGG
[ENA]
¡û
>W1710571023
FOVO01000028
Gammaproteobacteria
Xenorhabdus japonica [FOVO]
36558
36482
-
Pro
GGG
[ENA]
¡û
>W1710578162
FPBJ01000006
Gammaproteobacteria
Xenorhabdus koppenhoeferi [FPBJ]
22016
22092
+
Pro
GGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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