tRNA genes clustered and arranged according to each identical group

HIT: 1 Group(s).
Download Sequence Representative sequence of each cluster
View ClustalW result
Sort by Identical group No. Sort by the number of tRNAs in the Identical group
Select
Sequence ID Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species Start End Direction AA Anticodon Genome/Seq. Info. Decision
Identical group No.16378 (119 seq.)
>W1710808908 LKDZ01000004 Betaproteobacteria Variovorax boronicumulans [LKDZ] 49993 50083 + Ser GGA [ENA] ¡û
>W1710821619 LKTU01000002 Betaproteobacteria Variovorax paradoxus [LKTU] 86107 86017 - Ser GGA [ENA] ¡û
>W1710821684 LKTV01000031 Betaproteobacteria Variovorax paradoxus [LKTV] 51785 51695 - Ser GGA [ENA] ¡û
>W1710821738 LKTW01000057 Betaproteobacteria Variovorax paradoxus [LKTW] 24785 24875 + Ser GGA [ENA] ¡û
>W1710821805 LKTX01000108 Betaproteobacteria Variovorax paradoxus [LKTX] 24806 24896 + Ser GGA [ENA] ¡û
>W1710821858 LKTY01000112 Betaproteobacteria Variovorax paradoxus [LKTY] 6111 6021 - Ser GGA [ENA] ¡û
>W1710821886 LKTZ01000021 Betaproteobacteria Variovorax paradoxus [LKTZ] 40195 40285 + Ser GGA [ENA] ¡û
>W1710860125 LMCQ01000003 Betaproteobacteria Variovorax sp. Root318D1 [LMCQ] 194193 194103 - Ser GGA [ENA] ¡û
>W1710861774 LMDW01000016 Betaproteobacteria Variovorax sp. Root411 [LMDW] 281221 281131 - Ser GGA [ENA] ¡û
>W1710862501 LMEK01000025 Betaproteobacteria Variovorax sp. Root434 [LMEK] 13136 13046 - Ser GGA [ENA] ¡û
>W1710863092 LMEV01000017 Betaproteobacteria Variovorax sp. Root473 [LMEV] 1306104 1306014 - Ser GGA [ENA] ¡û
>W1710870504 LMKO01000012 Betaproteobacteria Xylophilus sp. Leaf220 [LMKO] 349045 349135 + Ser GGA [ENA] ¡û
>W1710873416 LMMT01000034 Betaproteobacteria Pseudorhodoferax sp. Leaf265 [LMMT] 300047 299957 - Ser GGA [ENA] ¡û
>W1710873495 LMMV01000006 Betaproteobacteria Pseudorhodoferax sp. Leaf267 [LMMV] 21563 21653 + Ser GGA [ENA] ¡û
>W1710882354 LMTS01000327 Betaproteobacteria Variovorax sp. WDL1 [LMTS] 77088 76998 - Ser GGA [ENA] ¡û
>W1711123812 LUJJ01000012 Betaproteobacteria Variovorax boronicumulans [LUJJ] 67127 67217 + Ser GGA [ENA] ¡û
>W1711143373 LVHG01000077 Betaproteobacteria Variovorax paradoxus [LVHG] 65963 65873 - Ser GGA [ENA] ¡û
>W131229594 AUGX01000016 Betaproteobacteria Ottowia thiooxydans DSM 14619 [AUGX] 11759 11669 - Ser GGA [ENA] ¡û
>W1711386502 MEFM01000022 Betaproteobacteria Variovorax sp. SCN 67-85 [MEFM] 20946 21036 + Ser GGA [ENA] ¡û
>W1711387496 MEGR01000066 Betaproteobacteria Variovorax sp. SCN 67-20 [MEGR] 18390 18300 - Ser GGA [ENA] ¡û
>W1711506629 MKWO01000021 Betaproteobacteria Variovorax sp. 67-131 [MKWO] 527500 527410 - Ser GGA [ENA] ¡û
>C171091638 CP019236 Betaproteobacteria Rhodoferax koreense DCY-110 [CP019236] 3164361 3164451 + Ser GGA - ¡û
>W131174634 ARIP01000062 Betaproteobacteria Variovorax paradoxus 4MFCol3.1 [ARIP] 113430 113520 + Ser GGA [ENA] ¡û
>W131180357 ARNA01000050 Betaproteobacteria Variovorax paradoxus 110B [ARNA] 488933 489023 + Ser GGA [ENA] ¡û
>WENV180016769 FSVW01001374 [FSVW] metagenome; soil 27244 27154 - Ser GGA [ENA] ¢þ
>WENV180016818 FSVW01003229 [FSVW] metagenome; soil 9337 9247 - Ser GGA [ENA] ¢þ
>WENV180016821 FSVW01003422 [FSVW] metagenome; soil 4050 3960 - Ser GGA [ENA] ¢þ
>WENV180025335 FTIO01002860 [FTIO] metagenome; soil 157 67 - Ser GGA [ENA] ¢þ
>WENV180028904 FTJH01364653 [FTJH] metagenome; soil 137 47 - Ser GGA [ENA] ¢þ
>WENV180030100 FTJL01157499 [FTJL] metagenome; soil 123 33 - Ser GGA [ENA] ¢þ
>WENV181364902 OFPF01002105 [OFPF] sediment metagenome; Lake sediment 178 88 - Ser GGA [ENA] ¢þ
>W141170149 AXXG01000005 Betaproteobacteria Variovorax sp. JGI 0001016-M12 [AXXG] 58460 58550 + Ser GGA [ENA] ¡û
>WENV183731211 PJTS01019485 [PJTS] soil metagenome; Soil (2) enriched on wood chips: alkali lignin treatment 593 503 - Ser GGA [ENA] ¢þ
>WENV183735192 PJUA01002273 [PJUA] soil metagenome; Soil enriched on filter paper: beechwood xylan treatment 2574 2664 + Ser GGA [ENA] ¢þ
>WENV183735589 PJUB01000104 [PJUB] soil metagenome; Soil enriched on filter paper: alkali lignin treatment 46353 46263 - Ser GGA [ENA] ¢þ
>WENV183736223 PJUC01000166 [PJUC] soil metagenome; Soil enriched on filter paper 20678 20768 + Ser GGA [ENA] ¢þ
>WENV183741530 PJUG01000046 [PJUG] feces metagenome; Chicken feces (2) enriched on wood chips: beechwood xylan treatment 97687 97597 - Ser GGA [ENA] ¢þ
>WENV183741901 PJUH01000003 [PJUH] feces metagenome; Chicken feces (2) enriched on wood chips: alkali lignin treatment 37458 37368 - Ser GGA [ENA] ¢þ
>WENV183744418 PJUK01022446 [PJUK] feces metagenome; Chicken feces enriched on filter paper: alkali lignin treatment 123 213 + Ser GGA [ENA] ¢þ
>WENV170559552 CXWL01128430 [CXWL] groundwater metagenome; biofilm material 1763 1853 + Ser GGA [ENA] ¢þ
>WENV170706501 LNAP01003633 [LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with 92 2 - Ser GGA [ENA] ¢þ
>WENV170708460 LNAP01084001 [LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with 828 738 - Ser GGA [ENA] ¢þ
>WENV170995510 MWWF01016608 [MWWF] soil metagenome; MGM-3 sample; Antarctic (ecotone) soil 240 330 + Ser GGA [ENA] ¢þ
>WENV171003348 NNBT01005764 [NNBT] plant metagenome; symbiotic tissue sample KVJ10 1582 1492 - Ser GGA [ENA] ¢þ
>WENV171003631 NNBU01001113 [NNBU] plant metagenome; symbiotic tissue sample KVJ2 496 586 + Ser GGA [ENA] ¢þ
>WENV171003786 NNBV01000771 [NNBV] plant metagenome; symbiotic tissue sample KVS11 82911 82821 - Ser GGA [ENA] ¢þ
>C181078469 CP023284 Betaproteobacteria Variovorax boronicumulans J1 [CP023284] 3901149 3901239 + Ser GGA - ¡û
>C181159371 CP027773 Betaproteobacteria Variovorax sp. PMC12 [CP027773, CP027774] 1288357 1288447 + Ser GGA - ¡û
>W09119923 ACEE01000008 Betaproteobacteria Variovorax paradoxus S110 [ACEE] 56540 56630 + Ser GGA [ENA] ¡û
>W141558085 JHVQ01000007 Betaproteobacteria Variovorax sp. URHB0020 [JHVQ] 211987 211897 - Ser GGA [ENA] ¡û
>C141002547 CP003911 Betaproteobacteria Variovorax paradoxus B4 [CP003911, CP003912] 2987484 2987574 + Ser GGA [Ensembl] ¡û
>W1910792827 MRCN01000008 Betaproteobacteria Variovorax boronicumulans ACN3 [MRCN] 154487 154577 + Ser GGA [ENA] ¡û
>C09111122 CP001635 Betaproteobacteria Variovorax paradoxus [CP001635] 2882712 2882622 - Ser GGA [Ensembl] ¡û
>W1911496694 OCMW01000001 Betaproteobacteria Variovorax sp. YR752 [OCMW] 4084556 4084646 + Ser GGA [ENA] ¡û
>W1911647335 QAJK01000046 Betaproteobacteria Variovorax sp. KBW07 [QAJK] 66057 66147 + Ser GGA [ENA] ¡û
>W1911775332 QXMN01000036 Betaproteobacteria Acidovorax cavernicola 1011MAR4D40.2 [QXMN] 24134 24224 + Ser GGA [ENA] ¡û
>SRA1001813 SRR001308.68098 Metagenomic characterization of a wastewater treatment plant (SRP000180) 102 12 - Ser GGA [SRA]
>W1810072207 PEFF01000001 Betaproteobacteria Variovorax sp. 54 [PEFF] 109858 109948 + Ser GGA [ENA] ¡û
>W1810192721 PKMT01000003 Betaproteobacteria Variovorax sp. RO1 [PKMT] 456619 456709 + Ser GGA [ENA] ¡û
>W1810486646 QAYA01000001 Betaproteobacteria Variovorax sp. GV040 [QAYA] 520506 520416 - Ser GGA [ENA] ¡û
>W1810577501 QEOH01000001 Betaproteobacteria Variovorax sp. GV014 [QEOH] 626031 625941 - Ser GGA [ENA] ¡û
>W1810577629 QEOJ01000008 Betaproteobacteria Rhodoferax sp. YR267 [QEOJ] 203209 203299 + Ser GGA [ENA] ¡û
>W1810672038 QJTC01000028 Betaproteobacteria Xylophilus ampelinus CECT 7646 [QJTC] 36485 36575 + Ser GGA [ENA] ¡û
>W1810672517 QJTM01000001 Betaproteobacteria Variovorax sp. GV035 [QJTM] 520506 520416 - Ser GGA [ENA] ¡û
>W1810676085 QKLT01000001 Betaproteobacteria Variovorax sp. GV042 [QKLT] 520506 520416 - Ser GGA [ENA] ¡û
>W1810682454 QKUE01000001 Betaproteobacteria Variovorax sp. GV004 [QKUE] 520506 520416 - Ser GGA [ENA] ¡û
>SRA1014190 SRR023845.33418 Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120) 44 134 + Ser GGA [SRA]
>SRA1015035 SRR023845.428195 Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120) 148 58 - Ser GGA [SRA]
>SRA1015238 SRR023845.514416 Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120) 121 211 + Ser GGA [SRA]
>W1511352953 JROV01000201 Betaproteobacteria Variovorax paradoxus ZNC0006 [JROV] 3400 3310 - Ser GGA [ENA] ¡û
>C11123612 CP002417 Betaproteobacteria Variovorax paradoxus EPS [CP002417] 3041957 3041867 - Ser GGA [Ensembl] ¡û
>W1511508930 JXQQ01000033 Betaproteobacteria Variovorax paradoxus MEDvA23 [JXQQ] 145768 145678 - Ser GGA [ENA] ¡û
>W1511555004 JZWI01000018 Betaproteobacteria Variovorax paradoxus TBEA6 [JZWI] 46224 46134 - Ser GGA [ENA] ¡û
>W1610028793 AWTM01000063 Betaproteobacteria Comamonas thiooxydans testosteroni [AWTM] 52159 52069 - Ser GGA [ENA] ¡û
>W1610028794 AWTM01000063 Betaproteobacteria Comamonas thiooxydans testosteroni [AWTM] 52001 51911 - Ser GGA [ENA] ¡û
>W1610028795 AWTM01000063 Betaproteobacteria Comamonas thiooxydans testosteroni [AWTM] 51843 51753 - Ser GGA [ENA] ¡û
>W1610028796 AWTM01000063 Betaproteobacteria Comamonas thiooxydans testosteroni [AWTM] 51685 51595 - Ser GGA [ENA] ¡û
>W1610072173 BCUS01000095 Betaproteobacteria Variovorax boronicumulans NBRC 103145 [BCUS] 23878 23968 + Ser GGA [ENA] ¡û
>W1610072227 BCUT01000008 Betaproteobacteria Variovorax paradoxus NBRC 15149 [BCUT] 109867 109957 + Ser GGA [ENA] ¡û
>W121084965 AKIW01000033 Betaproteobacteria Variovorax sp. CF313 [AKIW] 180964 181054 + Ser GGA [ENA] ¡û
>W1610685581 LKTU01000002 Betaproteobacteria Variovorax paradoxus [LKTU] 86107 86017 - Ser GGA [ENA] ¡û
>W1610685646 LKTV01000031 Betaproteobacteria Variovorax paradoxus [LKTV] 51785 51695 - Ser GGA [ENA] ¡û
>W1610685700 LKTW01000057 Betaproteobacteria Variovorax paradoxus [LKTW] 24785 24875 + Ser GGA [ENA] ¡û
>W1610685767 LKTX01000108 Betaproteobacteria Variovorax paradoxus [LKTX] 24806 24896 + Ser GGA [ENA] ¡û
>W1610685820 LKTY01000112 Betaproteobacteria Variovorax paradoxus [LKTY] 6111 6021 - Ser GGA [ENA] ¡û
>W1610685848 LKTZ01000021 Betaproteobacteria Variovorax paradoxus [LKTZ] 40195 40285 + Ser GGA [ENA] ¡û
>W1610722471 LMCQ01000003 Betaproteobacteria Variovorax sp. Root318D1 [LMCQ] 194193 194103 - Ser GGA [ENA] ¡û
>W1610724120 LMDW01000016 Betaproteobacteria Variovorax sp. Root411 [LMDW] 281221 281131 - Ser GGA [ENA] ¡û
>W1610724847 LMEK01000025 Betaproteobacteria Variovorax sp. Root434 [LMEK] 13136 13046 - Ser GGA [ENA] ¡û
>W1610725438 LMEV01000017 Betaproteobacteria Variovorax sp. Root473 [LMEV] 1306104 1306014 - Ser GGA [ENA] ¡û
>W1610732850 LMKO01000012 Betaproteobacteria Xylophilus sp. Leaf220 [LMKO] 349045 349135 + Ser GGA [ENA] ¡û
>W1610735762 LMMT01000034 Betaproteobacteria Pseudorhodoferax sp. Leaf265 [LMMT] 300047 299957 - Ser GGA [ENA] ¡û
>W1610735841 LMMV01000006 Betaproteobacteria Pseudorhodoferax sp. Leaf267 [LMMV] 21563 21653 + Ser GGA [ENA] ¡û
>W1610744280 LMTS01000327 Betaproteobacteria Variovorax sp. WDL1 [LMTS] 77088 76998 - Ser GGA [ENA] ¡û
>W1610954381 LVHG01000077 Betaproteobacteria Variovorax paradoxus [LVHG] 65963 65873 - Ser GGA [ENA] ¡û
>W1710026163 AWTM01000063 Betaproteobacteria Comamonas thiooxydans testosteroni [AWTM] 52159 52069 - Ser GGA [ENA] ¡û
>W1710026164 AWTM01000063 Betaproteobacteria Comamonas thiooxydans testosteroni [AWTM] 52001 51911 - Ser GGA [ENA] ¡û
>W1710026165 AWTM01000063 Betaproteobacteria Comamonas thiooxydans testosteroni [AWTM] 51843 51753 - Ser GGA [ENA] ¡û
>W1710026166 AWTM01000063 Betaproteobacteria Comamonas thiooxydans testosteroni [AWTM] 51685 51595 - Ser GGA [ENA] ¡û
>W1710069375 BCUS01000095 Betaproteobacteria Variovorax boronicumulans NBRC 103145 [BCUS] 23878 23968 + Ser GGA [ENA] ¡û
>W1710069429 BCUT01000008 Betaproteobacteria Variovorax paradoxus NBRC 15149 [BCUT] 109867 109957 + Ser GGA [ENA] ¡û
>W1710506204 FMUJ01000003 Betaproteobacteria Variovorax sp. EL159 [FMUJ] 43954 43864 - Ser GGA [ENA] ¡û
>W1710512944 FMZU01000010 Betaproteobacteria Variovorax sp. CF079 [FMZU] 108555 108645 + Ser GGA [ENA] ¡û
>W1710517963 FNDR01000014 Betaproteobacteria Variovorax sp. OV700 [FNDR] 89365 89455 + Ser GGA [ENA] ¡û
>W1710524824 FNJA01000007 Betaproteobacteria Rhodoferax sp. OV413 OV413 [FNJA] 81052 81142 + Ser GGA [ENA] ¡û
>W1710530023 FNOL01000005 Betaproteobacteria Variovorax sp. YR634 [FNOL] 266466 266376 - Ser GGA [ENA] ¡û
>W1710531351 FNPM01000002 Betaproteobacteria Variovorax sp. YR266 [FNPM] 488220 488310 + Ser GGA [ENA] ¡û
>W1710534004 FNRO01000001 Betaproteobacteria Variovorax sp. YR216 [FNRO] 376463 376553 + Ser GGA [ENA] ¡û
>W1710538138 FNUI01000006 Betaproteobacteria Variovorax sp. NFACC28 [FNUI] 285464 285374 - Ser GGA [ENA] ¡û
>W1710539551 FNVM01000006 Betaproteobacteria Variovorax sp. NFACC29 [FNVM] 207980 208070 + Ser GGA [ENA] ¡û
>W1710542709 FNZJ01000003 Betaproteobacteria Variovorax sp. OK202 [FNZJ] 276781 276691 - Ser GGA [ENA] ¡û
>W1710545275 FOBJ01000001 Betaproteobacteria Variovorax sp. YR750 [FOBJ] 468290 468380 + Ser GGA [ENA] ¡û
>W1710554281 FOII01000001 Betaproteobacteria Variovorax sp. OV084 [FOII] 1014304 1014394 + Ser GGA [ENA] ¡û
>W1710557137 FOKS01000006 Betaproteobacteria Variovorax sp. NFACC26 [FOKS] 285414 285324 - Ser GGA [ENA] ¡û
>W1710558148 FOLP01000003 Betaproteobacteria Variovorax sp. OK212 [FOLP] 276727 276637 - Ser GGA [ENA] ¡û
>W1710562243 FOOV01000003 Betaproteobacteria Variovorax sp. NFACC27 [FOOV] 207982 208072 + Ser GGA [ENA] ¡û
>W1710571860 FOWG01000002 Betaproteobacteria Variovorax sp. PDC80 [FOWG] 345363 345273 - Ser GGA [ENA] ¡û
>W1710572103 FOWL01000001 Betaproteobacteria Variovorax sp. OK605 [FOWL] 499052 499142 + Ser GGA [ENA] ¡û
>W1710573290 FOXJ01000001 Betaproteobacteria Variovorax sp. 770b2 [FOXJ] 1360913 1360823 - Ser GGA [ENA] ¡û
Select
Sequence ID Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species Start End Direction AA Anticodon Genome/Seq. Info. Decision
Download Sequence Representative sequence of each cluster
View ClustalW result

BACK