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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.163781 (41 seq.)
>C025673
AE000512
Thermotogota
Thermotoga maritima MSB8 [AE000512]
206394
206318
-
Arg
TCT
-
¡û
>C025776
CP000702
Thermotogota
Thermotoga petrophila RKU-1 [CP000702]
737135
737211
+
Arg
TCT
[Ensembl]
¡û
>WENV180072809
MPMA02043856
[MPMA] marine metagenome; 180 m water sample filtered on 0.2 um supor filter
495
419
-
Arg
TCT
[ENA]
¢þ
>W141070760
ASGQ01000004
Thermotogota
Thermotoga neapolitana LA10 [ASGQ]
217428
217504
+
Arg
TCT
[ENA]
¡û
>W141082668
AUNF01000052
Thermotogota
Thermotoga sp. A7A [AUNF]
16997
16921
-
Arg
TCT
[ENA]
¡û
>WENV181407965
OGCH01000294
[OGCH] hot springs metagenome; hot springs
10627
10551
-
Arg
TCT
[ENA]
¢þ
>C08010887
CP000969
Thermotogota
Thermotoga sp. RQ2 [CP000969]
772820
772896
+
Arg
TCT
[Ensembl]
¡û
>WENV183794492
PVBE010102081
[PVBE] marine metagenome; water
8166
8090
-
Arg
TCT
[ENA]
¢þ
>WENV170396509
CEUC01302451
[CEUC] marine metagenome genome assembly TARA_137_DCM_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
173
249
+
Arg
TCT
[ENA]
¢þ
>WENV170676175
LDZR01001299
[LDZR] terrestrial metagenome; oil reservoir sample K2
4652
4728
+
Arg
TCT
[ENA]
¢þ
>WENV170676770
LDZS01002199
[LDZS] terrestrial metagenome; oil reservoir sample K3
2771
2847
+
Arg
TCT
[ENA]
¢þ
>W09107407
ABIJ01000003
Thermotogota
Thermotoga sp. RQ2 [ABIJ]
34872
34948
+
Arg
TCT
[ENA]
¡û
>W09112238
ABXR01000030
Thermotogota
Marinitoga piezophila KA3 [ABXR]
35297
35373
+
Arg
TCT
[ENA]
¡û
>C09110633
CP000916
Thermotogota
Thermotoga neapolitana DSM 4359 [CP000916]
489320
489396
+
Arg
TCT
[Ensembl]
¡û
>C141011518
CP007013
Thermotogota
Thermotoga maritima MSB8 [CP007013]
739225
739301
+
Arg
TCT
-
¡û
>W1910635433
LNDD01000001
Thermotogota
Thermotoga sp. SG1 [LNDD]
252854
252930
+
Arg
TCT
[ENA]
¡û
>W1910635518
LNDE01000003
Thermotogota
Thermotoga sp. KOL6 [LNDE]
155406
155330
-
Arg
TCT
[ENA]
¡û
>C151004263
CP003408
Thermotogota
Thermotoga sp. 2812B [CP003408]
777587
777663
+
Arg
TCT
[Ensembl]
¡û
>C151004309
CP003409
Thermotogota
Thermotoga sp. Cell2 [CP003409]
722244
722320
+
Arg
TCT
[Ensembl]
¡û
>C151030623
CP007633
Thermotogota
Thermotoga sp. RQ7 [CP007633]
766613
766689
+
Arg
TCT
[Ensembl]
¡û
>C151074633
CP010967
Thermotogota
Thermotoga maritima Tma200 [CP010967]
206397
206321
-
Arg
TCT
[Ensembl]
¡û
>C151076987
CP011107
Thermotogota
Thermotoga maritima MSB8 [CP011107]
206397
206321
-
Arg
TCT
[Ensembl]
¡û
>C151077033
CP011108
Thermotogota
Thermotoga maritima Tma100 [CP011108]
206397
206321
-
Arg
TCT
[Ensembl]
¡û
>W10105820
ACXW01000001
Thermotogota
Thermotoga petrophila RKU-10 [ACXW]
203510
203434
-
Arg
TCT
[ENA]
¡û
>C10113513
CP001839
Thermotogota
Thermotoga petrophila RKU-10 [CP001839]
857687
857611
-
Arg
TCT
[Ensembl]
¡û
>W11108140
ACXW01000001
Thermotogota
Thermotoga petrophila RKU-10 [ACXW]
203510
203434
-
Arg
TCT
[ENA]
¡û
>W11180820
AGIJ01000003
Thermotogota
Thermotoga maritima MSB8 [AGIJ]
203214
203138
-
Arg
TCT
[ENA]
¡û
>W121062177
AJII01000007
Thermotogota
Thermotoga sp. EMP [AJII]
205389
205465
+
Arg
TCT
[ENA]
¡û
>C131012523
CP004077
Thermotogota
Thermotoga maritima MSB8 [CP004077]
206397
206321
-
Arg
TCT
-
¡û
>W1610540353
JSFG01000015
Thermotogota
Thermotoga sp. TBGT1765 [JSFG]
166573
166649
+
Arg
TCT
[ENA]
¡û
>W1610540366
JSFH01000004
Thermotogota
Thermotoga sp. Mc24 [JSFH]
93512
93588
+
Arg
TCT
[ENA]
¡û
>W1610540445
JSFI01000014
Thermotogota
Thermotoga sp. TBGT1766 [JSFI]
154846
154922
+
Arg
TCT
[ENA]
¡û
>W1610540468
JSFJ01000009
Thermotogota
Thermotoga sp. Xyl54 [JSFJ]
89060
88984
-
Arg
TCT
[ENA]
¡û
>W1610612921
LGFG01000051
Thermotogota
Thermotoga petrophila naphthophila [LGFG]
4652
4728
+
Arg
TCT
[ENA]
¡û
>W1610613160
LGFM01000068
Thermotogota
Thermotoga sp. 47_83 [LGFM]
2771
2847
+
Arg
TCT
[ENA]
¡û
>W1710643374
JSFG01000015
Thermotogota
Thermotoga sp. TBGT1765 [JSFG]
166573
166649
+
Arg
TCT
[ENA]
¡û
>W1710643387
JSFH01000004
Thermotogota
Thermotoga sp. Mc24 [JSFH]
93512
93588
+
Arg
TCT
[ENA]
¡û
>W1710643466
JSFI01000014
Thermotogota
Thermotoga sp. TBGT1766 [JSFI]
154846
154922
+
Arg
TCT
[ENA]
¡û
>W1710643489
JSFJ01000009
Thermotogota
Thermotoga sp. Xyl54 [JSFJ]
89060
88984
-
Arg
TCT
[ENA]
¡û
>W1710734203
LGFG01000051
Thermotogota
Thermotoga petrophila naphthophila [LGFG]
4652
4728
+
Arg
TCT
[ENA]
¡û
>W1710734367
LGFM01000068
Thermotogota
Thermotoga sp. 47_83 [LGFM]
2771
2847
+
Arg
TCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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