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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.163808 (37 seq.)
>A171002031
CP002551
Euryarchaeota
Methanobacterium lacus AL-21 [CP002551]
2241581
2241655
+
Gly
TCC
-
¡û
>A171002276
CP002772
Euryarchaeota
Methanobacterium paludis SWAN1 [CP002772]
483671
483596
-
Gly
TCC
-
¡û
>A171003993
CP006933
Euryarchaeota
Methanobacterium formicicum BRM9 [CP006933]
1818327
1818401
+
Gly
TCC
-
¡û
>A171007338
HG425166
Euryarchaeota
Methanobacterium sp. MB1 [HG425166]
503559
503485
-
Gly
TCC
-
¡û
>A171007369
LN515531
Euryarchaeota
Methanobacterium formicicum [LN515531]
2433462
2433536
+
Gly
TCC
-
¡û
>A171007425
LN734822
Euryarchaeota
Methanobacterium formicicum [LN734822]
600822
600748
-
Gly
TCC
-
¡û
>A171007688
LT607756
Euryarchaeota
Methanobacterium congolense [LT607756]
458266
458191
-
Gly
TCC
-
¡û
>WENV180036850
FVAA010383570
[FVAA] soil metagenome; Soil
77
152
+
Gly
TCC
[ENA]
¢þ
>WENV180221048
OBAX01008397
[OBAX] human gut metagenome; human gut
188
114
-
Gly
TCC
[ENA]
¢þ
>WENV180246710
OBDP01056967
[OBDP] human gut metagenome; human gut
5
79
+
Gly
TCC
[ENA]
¢þ
>WENV180545491
OCIT01035289
[OCIT] human gut metagenome; human gut
110
184
+
Gly
TCC
[ENA]
¢þ
>WENV180659618
OCVV010873330
[OCVV] gut metagenome; gut
1103
1029
-
Gly
TCC
[ENA]
¢þ
>WENV180659619
OCVV010873330
[OCVV] gut metagenome; gut
966
892
-
Gly
TCC
[ENA]
¢þ
>WENV180659621
OCVV010873330
[OCVV] gut metagenome; gut
1103
1029
-
Gly
TCC
[ENA]
¢þ
>WENV180659622
OCVV010873330
[OCVV] gut metagenome; gut
966
892
-
Gly
TCC
[ENA]
¢þ
>WENV181229636
OFEK01000013
[OFEK] activated sludge metagenome; Anaerobic digester
245453
245526
+
Gly
TCC
[ENA]
¢þ
>WENV181229988
OFEK01000159
[OFEK] activated sludge metagenome; Anaerobic digester
72332
72259
-
Gly
TCC
[ENA]
¢þ
>WENV183133208
OLOB01039230
[OLOB] human gut metagenome; faeces
776
850
+
Gly
TCC
[ENA]
¢þ
>WENV183296155
OLSL01014686
[OLSL] human gut metagenome; faeces
120
194
+
Gly
TCC
[ENA]
¢þ
>WENV183507627
OMGY01039366
[OMGY] human gut metagenome; human gut
553
627
+
Gly
TCC
[ENA]
¢þ
>At1573
CP000102
Euryarchaeota
Methanosphaera stadtmanae DSM 3091 [CP000102]
1391385
1391458
+
Gly
TCC
[Ensembl]
¡û
>At1574
CP000102
Euryarchaeota
Methanosphaera stadtmanae DSM 3091 [CP000102]
1391522
1391595
+
Gly
TCC
[Ensembl]
¡û
>WENV170670652
LAHT01107586
[LAHT] activated sludge metagenome; Sample C-4; Sludge from methanogenic chamber (fourth chamber) of Anaerobic Baffled Reactor over
134
60
-
Gly
TCC
[ENA]
¢þ
>WENV170677323
LDZT01004942
[LDZT] terrestrial metagenome; oil reservoir sample SB1
12546
12470
-
Gly
TCC
[ENA]
¢þ
>WENV170677326
LDZT01004954
[LDZT] terrestrial metagenome; oil reservoir sample SB1
10842
10915
+
Gly
TCC
[ENA]
¢þ
>WENV170975516
MTKZ01001000
[MTKZ] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
7598
7671
+
Gly
TCC
[ENA]
¢þ
>W1910575122
JQLY01000001
Euryarchaeota
Methanobacterium sp. SMA-27 [JQLY]
297100
297025
-
Gly
TCC
[ENA]
¡û
>W1910576015
JRWK01000002
Euryarchaeota
Methanosphaera sp. WGK6 [JRWK]
157900
157826
-
Gly
TCC
[ENA]
¡û
>W1910576016
JRWK01000002
Euryarchaeota
Methanosphaera sp. WGK6 [JRWK]
157757
157683
-
Gly
TCC
[ENA]
¡û
>W1910635180
LMVN01000026
Euryarchaeota
Methanosphaera cuniculi 1R-7 [LMVN]
75086
75160
+
Gly
TCC
[ENA]
¡û
>W1910646629
LWMS01000027
Euryarchaeota
Methanosphaera cuniculi DSM 4103 [LWMS]
4857
4783
-
Gly
TCC
[ENA]
¡û
>W1910646630
LWMS01000027
Euryarchaeota
Methanosphaera cuniculi DSM 4103 [LWMS]
4721
4647
-
Gly
TCC
[ENA]
¡û
>W1910656122
MAIF01000059
Euryarchaeota
Methanosphaera sp. A6 [MAIF]
14792
14866
+
Gly
TCC
[ENA]
¡û
>W1610006244
AMGN01000059
Euryarchaeota
Methanobacterium sp. Maddingley MBC34 [AMGN]
13553
13479
-
Gly
TCC
[ENA]
¡û
>W1610011031
AMPO01000009
Euryarchaeota
Methanobacterium formicicum DSM 3637 [AMPO]
30674
30748
+
Gly
TCC
[ENA]
¡û
>W1610613877
LGGL01000049
Euryarchaeota
Methanobacterium sp. 42_16 [LGGL]
12546
12470
-
Gly
TCC
[ENA]
¡û
>W1610613880
LGGL01000061
Euryarchaeota
Methanobacterium sp. 42_16 [LGGL]
10842
10915
+
Gly
TCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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