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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.163823 (16 seq.)
>A171000923
CP001719
Euryarchaeota
Methanobrevibacter ruminantium M1 [CP001719]
319296
319371
+
Arg
GCG
-
¡û
>A171003549
CP004050
Euryarchaeota
Methanobrevibacter sp. AbM4 [CP004050]
169599
169674
+
Arg
GCG
-
¡û
>A171005836
CP010834
Euryarchaeota
Methanobrevibacter sp. YE315 [CP010834]
2155707
2155634
-
Arg
GCG
-
¡û
>A171006065
CP011266
Euryarchaeota
Methanobrevibacter millerae SM9 [CP011266]
233330
233405
+
Arg
GCG
-
¡û
>A171006549
CP014265
Euryarchaeota
Methanobrevibacter olleyae YLM1 [CP014265]
2175869
2175942
+
Arg
GCG
-
¡û
>WENV180003567
FLNZ01005911
[FLNZ] bioreactor metagenome; Moose rumen
1782
1707
-
Arg
GCG
[ENA]
¢þ
>WENV180658681
OCVV010790298
[OCVV] gut metagenome; gut
497
422
-
Arg
GCG
[ENA]
¢þ
>WENV180658682
OCVV010790298
[OCVV] gut metagenome; gut
497
422
-
Arg
GCG
[ENA]
¢þ
>WENV180660399
OCVV010931668
[OCVV] gut metagenome; gut
110
35
-
Arg
GCG
[ENA]
¢þ
>WENV180660400
OCVV010931668
[OCVV] gut metagenome; gut
110
35
-
Arg
GCG
[ENA]
¢þ
>W1910229648
FOAK01000001
Euryarchaeota
Methanobrevibacter gottschalkii DSM 11978 [FOAK]
147612
147685
+
Arg
GCG
[ENA]
¡û
>W1910230542
FOTL01000015
Euryarchaeota
Methanobrevibacter olleyae DSM 16632 [FOTL]
16854
16927
+
Arg
GCG
[ENA]
¡û
>W1910655431
LZPL01000053
Euryarchaeota
Methanobrevibacter sp. A27 [LZPL]
22625
22698
+
Arg
GCG
[ENA]
¡û
>W1910793171
MRCT01000245
Euryarchaeota
Methanobrevibacter sp. 87.7 [MRCT]
1631
1556
-
Arg
GCG
[ENA]
¡û
>W1910832154
MZGS01000027
Euryarchaeota
Methanobrevibacter thaueri DSM 11995 [MZGS]
46824
46751
-
Arg
GCG
[ENA]
¡û
>W1610040628
BAGX02000022
Euryarchaeota
Methanobrevibacter boviskoreani JH1 [BAGX]
2481
2556
+
Arg
GCG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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