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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.163828 (10 seq.)
>WENV011159
AACY020303844
Marine microbial communities from Global Ocean Sampling (GOS)
41
118
+
Val
TAC
[ENA]
>WENV180358278
OBNP01021356
[OBNP] marine metagenome; seawater
151
75
-
Val
TAC
[ENA]
¢þ
>WENV180360694
OBNU01011704
[OBNU] marine metagenome; ENVO:00000021 'freshwater lake
207
283
+
Val
TAC
[ENA]
¢þ
>WENV181233980
OFET01000559
[OFET] microbial mat metagenome; enrichment culture HLUCC-A from microbial mat sample; contains cyanobacterium Phormidesmis
18500
18576
+
Val
TAC
[ENA]
¢þ
>WENV181234589
OFEU01000486
[OFEU] microbial mat metagenome; enrichment culture HLUCC-O from microbial mat sample; contains cyanobacterium Phormidium
18500
18576
+
Val
TAC
[ENA]
¢þ
>WENV170122085
CENN01045570
[CENN] marine metagenome genome assembly TARA_023_SRF_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
1832
1909
+
Val
TAC
[ENA]
¢þ
>WENV170135603
CENU01237484
[CENU] marine metagenome genome assembly TARA_025_SRF_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
78
1
-
Val
TAC
[ENA]
¢þ
>WENV170160682
CEOK01168719
[CEOK] marine metagenome genome assembly TARA_030_SRF_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
4115
4192
+
Val
TAC
[ENA]
¢þ
>W1610629300
LIHN01000014
Bacteroidota
Bacteroidetes bacterium HLUCCA01 [LIHN]
1852
1775
-
Val
TAC
[ENA]
¡û
>W1710760439
LIHN01000014
Bacteroidota
Bacteroidetes bacterium HLUCCA01 [LIHN]
1852
1775
-
Val
TAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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