This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.163988 (6 seq.)
>WENV170563411
CZCB01017409
[CZCB] anaerobic digester metagenome; anaerobic digester
1596
1520
-
Ile
GAT
[ENA]
¢þ
>WENV170688806
LFRM01262535
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
444
520
+
Ile
GAT
[ENA]
¢þ
>W09126607
ACJX01000142
Synergistota
Acetomicrobium hydrogeniformans ATCC BAA-1850 [ACJX]
27452
27376
-
Ile
GAT
[ENA]
¡û
>C121008083
CP003198
Synergistota
Acetomicrobium mobile DSM 13181 [CP003198]
883871
883795
-
Ile
GAT
[Ensembl]
¡û
>W1710530814
FNPD01000001
Synergistota
Acetomicrobium thermoterrenum DSM 13490 [FNPD]
297126
297202
+
Ile
GAT
[ENA]
¡û
>W1710594057
FSQZ01000001
Synergistota
Acetomicrobium flavidum [FSQZ]
205245
205321
+
Ile
GAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK