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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.164055 (8 seq.)
>WENV182281632
OHVB01012125
[OHVB] human gut metagenome; feces
665
588
-
Pro
TGG
[ENA]
¢þ
>WENV182334362
OHZM01007469
[OHZM] human gut metagenome; feces
1504
1581
+
Pro
TGG
[ENA]
¢þ
>WENV182335991
OHZS01001147
[OHZS] human gut metagenome; feces
7938
7861
-
Pro
TGG
[ENA]
¢þ
>WENV182350578
OIBF01007938
[OIBF] human gut metagenome; feces
948
871
-
Pro
TGG
[ENA]
¢þ
>WENV182525693
OIWT01003747
[OIWT] human gut metagenome; faeces
12602
12525
-
Pro
TGG
[ENA]
¢þ
>WENV182925001
OKUI01005300
[OKUI] human gut metagenome; feces
1146
1069
-
Pro
TGG
[ENA]
¢þ
>WENV182932454
OKUU01005697
[OKUU] human gut metagenome; feces
1678
1601
-
Pro
TGG
[ENA]
¢þ
>WENV182968334
OKXB01001569
[OKXB] human gut metagenome; human gut
2886
2963
+
Pro
TGG
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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