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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.164065 (9 seq.)
>W1711136671
LVAL01000043
Bacillota
Clostridiales bacterium Firm_06 [LVAL]
488787
488863
+
Glu
TTC
[ENA]
¡û
>WENV180663882
OCVV011136766
[OCVV] gut metagenome; gut
233
157
-
Glu
TTC
[ENA]
¢þ
>WENV180663884
OCVV011136766
[OCVV] gut metagenome; gut
233
157
-
Glu
TTC
[ENA]
¢þ
>W141075588
ATAX01000028
Bacillota
Ruminococcus flavefaciens 007c [ATAX]
496952
497028
+
Glu
TTC
[ENA]
¡û
>W141280102
JAGT01000001
Bacillota
Ruminococcus flavefaciens AE3010 [JAGT]
943693
943617
-
Glu
TTC
[ENA]
¡û
>W141560158
JHXI01000017
Bacillota
Ruminococcus flavefaciens ND2009 [JHXI]
62546
62470
-
Glu
TTC
[ENA]
¡û
>W1610947791
LVAL01000043
Bacillota
Clostridiales bacterium Firm_06 [LVAL]
488787
488863
+
Glu
TTC
[ENA]
¡û
>W1710543208
FNZT01000012
Bacillota
Ruminococcus flavefaciens [FNZT]
76016
75940
-
Glu
TTC
[ENA]
¡û
>W1710579528
FPIP01000002
Bacillota
Ruminococcus flavefaciens [FPIP]
317553
317477
-
Glu
TTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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