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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.164080 (20 seq.)
>W131229766
AUHA01000003
Bacteroidota
Daejeonella oryzae DSM 19973 [AUHA]
701431
701507
+
Arg
TCT
[ENA]
¡û
>C171057648
CP017141
Bacteroidota
Pedobacter steynii DX4 [CP017141]
4436049
4436125
+
Arg
TCT
-
¡û
>w027789
ABCM01000006
Bacteroidota
Pedobacter sp. BAL39 [ABCM]
172074
172150
+
Arg
TCT
[ENA]
¡û
>WENV183741740
PJUG01004955
[PJUG] feces metagenome; Chicken feces (2) enriched on wood chips: beechwood xylan treatment
315
241
-
Arg
TCT
[ENA]
¢þ
>WENV183742620
PJUI01000031
[PJUI] feces metagenome; Chicken feces (2) enriched on wood chips
197261
197187
-
Arg
TCT
[ENA]
¢þ
>W141727620
JNFF01000019
Bacteroidota
Pedobacter antarcticus 4BY [JNFF]
23988
23912
-
Arg
TCT
[ENA]
¡û
>W1911647387
QAJL01000001
Bacteroidota
Pedobacter sp. KBW06 [QAJL]
583080
583006
-
Arg
TCT
[ENA]
¡û
>W1810693868
QLLR01000002
Bacteroidota
Pedobacter cryoconitis DSM 14825 [QLLR]
393287
393361
+
Arg
TCT
[ENA]
¡û
>W1810693887
QLLR01000009
Bacteroidota
Pedobacter cryoconitis DSM 14825 [QLLR]
48368
48294
-
Arg
TCT
[ENA]
¡û
>W1511509415
JXRA01000029
Bacteroidota
Pedobacter lusitanus NL19 [JXRA]
41608
41684
+
Arg
TCT
[ENA]
¡û
>W1511509440
JXRA01000111
Bacteroidota
Pedobacter lusitanus NL19 [JXRA]
29228
29152
-
Arg
TCT
[ENA]
¡û
>C161049144
CP012996
Bacteroidota
Pedobacter sp. PACM 27299 PAMC 27299 [CP012996]
5179150
5179226
+
Arg
TCT
[Ensembl]
¡û
>C161049176
CP012996
Bacteroidota
Pedobacter sp. PACM 27299 PAMC 27299 [CP012996]
1765373
1765297
-
Arg
TCT
[Ensembl]
¡û
>C161073045
CP014504
Bacteroidota
Pedobacter cryoconitis PAMC 27485 [CP014504]
1702852
1702776
-
Arg
TCT
[Ensembl]
¡û
>C161073052
CP014504
Bacteroidota
Pedobacter cryoconitis PAMC 27485 [CP014504]
735335
735261
-
Arg
TCT
[Ensembl]
¡û
>W1710522079
FNGY01000002
Bacteroidota
Pedobacter steynii [FNGY]
908245
908321
+
Arg
TCT
[ENA]
¡û
>W1710522177
FNGZ01000019
Bacteroidota
Pedobacter antarcticus [FNGZ]
549
473
-
Arg
TCT
[ENA]
¡û
>W1710533289
FNRA01000004
Bacteroidota
Pedobacter hartonius [FNRA]
333115
333041
-
Arg
TCT
[ENA]
¡û
>W1710560852
FONS01000001
Bacteroidota
Pedobacter antarcticus [FONS]
897332
897256
-
Arg
TCT
[ENA]
¡û
>W1710583259
FQUQ01000005
Bacteroidota
Pedobacter caeni [FQUQ]
142385
142461
+
Arg
TCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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