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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.164085 (17 seq.)
>C171019430
CP013018
Bacillota
Clostridium pasteurianum DSM 525 = ATCC 6013 [CP013018]
29566
29642
+
Arg
ACG
-
¡û
>C171019509
CP013019
Bacillota
Clostridium pasteurianum M150B [CP013019]
29566
29642
+
Arg
ACG
-
¡û
>W131082849
ANZB01000017
Bacillota
Clostridium pasteurianum DSM 525 [ANZB]
64367
64443
+
Arg
ACG
[ENA]
¡û
>W131082854
ANZB01000017
Bacillota
Clostridium pasteurianum DSM 525 [ANZB]
79411
79487
+
Arg
ACG
[ENA]
¡û
>WENV170003014
AGTN01195724
[AGTN] bioreactor metagenome; poplar biomass
64
140
+
Arg
ACG
[ENA]
¢þ
>WENV170700002
LIDZ01000162
[LIDZ] food metagenome; wine grapes on drying loft during traditional withering process
663
587
-
Arg
ACG
[ENA]
¢þ
>C181047810
CP020953
Bacillota
Clostridium drakei SL1 [CP020953]
5486641
5486717
+
Arg
ACG
-
¡û
>W141565595
JIBU02000041
Bacillota
Clostridium drakei [JIBU]
26998
26922
-
Arg
ACG
[ENA]
¡û
>W141569562
JIDX01000050
Bacillota
Clostridium scatologenes [JIDX]
47703
47627
-
Arg
ACG
[ENA]
¡û
>W141702341
JMLK01000031
Bacillota
Clostridium akagii DSM 12554 [JMLK]
13280
13204
-
Arg
ACG
[ENA]
¡û
>W141803825
JPGY01000010
Bacillota
Clostridium pasteurianum DSM 525 = ATCC 6013 [JPGY]
30793
30717
-
Arg
ACG
[ENA]
¡û
>C151047006
CP009267
Bacillota
Clostridium pasteurianum DSM 525 = ATCC 6013 [CP009267]
29566
29642
+
Arg
ACG
[Ensembl]
¡û
>C151047085
CP009268
Bacillota
Clostridium pasteurianum DSM 525 = ATCC 6013 [CP009268]
29566
29642
+
Arg
ACG
[Ensembl]
¡û
>C151062299
CP009933
Bacillota
Clostridium scatologenes ATCC 25775 [CP009933]
4434931
4434855
-
Arg
ACG
[Ensembl]
¡û
>W121124026
BAEV01000082
Bacillota
Clostridium arbusti SL206 [BAEV]
13173
13249
+
Arg
ACG
[ENA]
¡û
>W1710605754
FWXH01000017
Bacillota
Clostridium acidisoli DSM 12555 [FWXH]
45547
45471
-
Arg
ACG
[ENA]
¡û
>W1710731245
LFYL01000002
Bacillota
Clostridium pasteurianum [LFYL]
1815012
1815088
+
Arg
ACG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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