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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.16434 (91 seq.)
>W1710782868
LJFJ01000004
Bacillota
Limosilactobacillus fermentum [LJFJ]
844407
844320
-
Ser
TGA
[ENA]
¡û
>W1710801563
LJWZ01000013
Bacillota
Limosilactobacillus fermentum [LJWZ]
943
1030
+
Ser
TGA
[ENA]
¡û
>W1711185532
LWNM01000028
Bacillota
Lactobacillus sp. HMSC24D01 [LWNM]
468
381
-
Ser
TGA
[ENA]
¡û
>W1711487598
MKGE01000001
Bacillota
Limosilactobacillus fermentum [MKGE]
12634
12547
-
Ser
TGA
[ENA]
¡û
>W1712106910
NIWV01000011
Bacillota
Limosilactobacillus fermentum [NIWV]
971
1058
+
Ser
TGA
[ENA]
¡û
>C171057906
CP017151
Bacillota
Limosilactobacillus fermentum NCC2970 [CP017151]
1501313
1501400
+
Ser
TGA
-
¡û
>C171088309
CP019030
Bacillota
Limosilactobacillus fermentum SNUV175 [CP019030]
328552
328465
-
Ser
TGA
-
¡û
>C171115632
CP021104
Bacillota
Limosilactobacillus fermentum FTDC 8312 [CP021104]
659837
659924
+
Ser
TGA
-
¡û
>C171123275
CP021790
Bacillota
Limosilactobacillus fermentum LAC FRN-92 [CP021790]
835171
835258
+
Ser
TGA
-
¡û
>W131203206
ASXU01000432
Bacillota
Limosilactobacillus fermentum FTDC8312 [ASXU]
321
408
+
Ser
TGA
[ENA]
¡û
>WENV180152808
OAUQ01099400
[OAUQ] human gut metagenome; faeces
61
148
+
Ser
TGA
[ENA]
¢þ
>WENV180410819
OBUX01009568
[OBUX] human gut metagenome; faeces
131
218
+
Ser
TGA
[ENA]
¢þ
>W141092484
AVAB01000001
Bacillota
Limosilactobacillus fermentum MTCC 8711 [AVAB]
657335
657422
+
Ser
TGA
[ENA]
¡û
>W141094619
AVCT01000026
Bacillota
Limosilactobacillus fermentum 3872 [AVCT]
1526
1613
+
Ser
TGA
[ENA]
¡û
>W141148193
AWXS01000060
Bacillota
Limosilactobacillus fermentum Lf1 [AWXS]
4066
4153
+
Ser
TGA
[ENA]
¡û
>WENV181506557
OGGM01014140
[OGGM] metagenome; Human gut stool
427
514
+
Ser
TGA
[ENA]
¢þ
>W141180751
AYHA01000136
Bacillota
Limosilactobacillus fermentum NB-22 [AYHA]
90
3
-
Ser
TGA
[ENA]
¡û
>WENV182954719
OKWA01020985
[OKWA] human gut metagenome; human gut
398
485
+
Ser
TGA
[ENA]
¢þ
>C08006054
AP008937
Bacillota
Limosilactobacillus fermentum IFO 3956 [AP008937]
657070
657157
+
Ser
TGA
[Ensembl]
¡û
>WENV183166787
OLOY01001095
[OLOY] human gut metagenome; faeces
11668
11581
-
Ser
TGA
[ENA]
¢þ
>WENV183606353
OODN01002827
[OODN] human gut metagenome; human gut
214
301
+
Ser
TGA
[ENA]
¢þ
>C181004027
AP017973
Bacillota
Limosilactobacillus fermentum MTCC 25067 [AP017973]
626332
626419
+
Ser
TGA
-
¡û
>C181054758
CP021964
Bacillota
Limosilactobacillus fermentum CBA7106 [CP021964]
596897
596984
+
Ser
TGA
-
¡û
>C181196696
CP031195
Bacillota
Limosilactobacillus fermentum LDTM 7301 [CP031195]
109718
109805
+
Ser
TGA
-
¡û
>C181226931
LT906621
Bacillota
Limosilactobacillus fermentum IMDO 130101 [LT906621]
637928
638015
+
Ser
TGA
-
¡û
>C191012489
CP016803
Bacillota
Limosilactobacillus fermentum SK152 [CP016803]
555386
555299
-
Ser
TGA
-
¡û
>C191105240
CP033371
Bacillota
Limosilactobacillus fermentum DR9 [CP033371]
314147
314060
-
Ser
TGA
-
¡û
>C191119262
CP034099
Bacillota
Limosilactobacillus fermentum LMT2-75 [CP034099]
95635
95548
-
Ser
TGA
-
¡û
>C191121357
CP034193
Bacillota
Limosilactobacillus fermentum YL-11 [CP034193]
601663
601750
+
Ser
TGA
-
¡û
>C191134228
CP035054
Bacillota
Limosilactobacillus fermentum SRCM103285 [CP035054]
1479236
1479149
-
Ser
TGA
-
¡û
>C191134285
CP035055
Bacillota
Limosilactobacillus fermentum SRCM 103290 [CP035055]
802493
802406
-
Ser
TGA
-
¡û
>W09122642
ACGI01000081
Bacillota
Limosilactobacillus fermentum ATCC 14931 [ACGI]
1645
1558
-
Ser
TGA
[ENA]
¡û
>W141805353
JPKN01000235
Bacillota
Lacticaseibacillus paracasei casei [JPKN]
80381
80294
-
Ser
TGA
[ENA]
¡û
>W1910181294
BJLV01000118
Bacillota
Limosilactobacillus fermentum NBRC 3959 [BJLV]
844
931
+
Ser
TGA
[ENA]
¡û
>W1910374075
FUHY01000067
Bacillota
Limosilactobacillus fermentum S13 [FUHY]
82428
82341
-
Ser
TGA
[ENA]
¡û
>W1910954302
NJPQ01000008
Bacillota
Limosilactobacillus fermentum SHI-2 [NJPQ]
56713
56626
-
Ser
TGA
[ENA]
¡û
>W1911533712
OKQY01000092
Bacillota
Limosilactobacillus fermentum CECT 9269 [OKQY]
971
1058
+
Ser
TGA
[ENA]
¡û
>W1810058997
PDKX01000097
Bacillota
Limosilactobacillus fermentum NCDC 400 [PDKX]
2229
2142
-
Ser
TGA
[ENA]
¡û
>W1810090589
PGGE01000015
Bacillota
Limosilactobacillus fermentum 103 [PGGE]
44830
44743
-
Ser
TGA
[ENA]
¡û
>W1810090639
PGGI01000010
Bacillota
Limosilactobacillus fermentum 279 [PGGI]
971
1058
+
Ser
TGA
[ENA]
¡û
>W1810090699
PGGJ01000083
Bacillota
Limosilactobacillus fermentum 311 [PGGJ]
748
661
-
Ser
TGA
[ENA]
¡û
>W1810190854
PKKD01000077
Bacillota
Limosilactobacillus fermentum UMB0187 [PKKD]
932
1019
+
Ser
TGA
[ENA]
¡û
>W1810196522
PNBB01000006
Bacillota
Limosilactobacillus fermentum LfU21 [PNBB]
58336
58249
-
Ser
TGA
[ENA]
¡û
>W1810223792
POTQ01000027
Bacillota
Limosilactobacillus fermentum CRL1446 [POTQ]
37385
37298
-
Ser
TGA
[ENA]
¡û
>W1810297069
PTLW01000044
Bacillota
Limosilactobacillus fermentum MD IIE-4657 [PTLW]
1020
1107
+
Ser
TGA
[ENA]
¡û
>W1810473327
QAHK01000007
Bacillota
Limosilactobacillus fermentum DS13_7 [QAHK]
56959
56872
-
Ser
TGA
[ENA]
¡û
>W1810489159
QAZV01000007
Bacillota
Limosilactobacillus fermentum DS19_7 [QAZV]
983
1070
+
Ser
TGA
[ENA]
¡û
>W1810595155
QGDR01000002
Bacillota
Limosilactobacillus mucosae AGR63 [QGDR]
92433
92346
-
Ser
TGA
[ENA]
¡û
>W1810695497
QLNN01000028
Bacillota
Limosilactobacillus fermentum LF2 [QLNN]
934
1021
+
Ser
TGA
[ENA]
¡û
>W1810705608
QMJL01000021
Bacillota
Limosilactobacillus fermentum KMB_612 [QMJL]
33806
33719
-
Ser
TGA
[ENA]
¡û
>W1810705682
QMJM01000104
Bacillota
Limosilactobacillus fermentum KMB_613 [QMJM]
877
964
+
Ser
TGA
[ENA]
¡û
>W1810811199
QRYA01000008
Bacillota
Limosilactobacillus fermentum AF16-22LB [QRYA]
809
896
+
Ser
TGA
[ENA]
¡û
>W1810811855
QRYM01000034
Bacillota
Limosilactobacillus fermentum AF15-40LB [QRYM]
809
896
+
Ser
TGA
[ENA]
¡û
>W1810814661
QSAL01000016
Bacillota
Limosilactobacillus fermentum AF11-4-H [QSAL]
952
1039
+
Ser
TGA
[ENA]
¡û
>C151075312
CP011013
Bacillota
Limosilactobacillus mucosae LM1 [CP011013]
1735446
1735359
-
Ser
TGA
[Ensembl]
¡û
>C151084251
CP011536
Bacillota
Limosilactobacillus fermentum 3872 [CP011536]
650331
650418
+
Ser
TGA
-
¡û
>W10103400
ACQG01000069
Bacillota
Limosilactobacillus fermentum 28-3-CHN [ACQG]
844
931
+
Ser
TGA
[ENA]
¡û
>W1510021791
BCAH01000024
Bacillota
Limosilactobacillus gorillae KZ01 [BCAH]
858
945
+
Ser
TGA
[ENA]
¡û
>W1510022549
CBZV010000018
Bacillota
Limosilactobacillus fermentum 222 [CBZV]
41675
41588
-
Ser
TGA
[ENA]
¡û
>C10108354
CP002033
Bacillota
Limosilactobacillus fermentum CECT 5716 [CP002033]
657628
657715
+
Ser
TGA
[Ensembl]
¡û
>W11103556
ACQG01000069
Bacillota
Limosilactobacillus fermentum 28-3-CHN [ACQG]
844
931
+
Ser
TGA
[ENA]
¡û
>W1511352319
JROC01000011
Bacillota
Limosilactobacillus mucosae CRL573 [JROC]
910
997
+
Ser
TGA
[ENA]
¡û
>W1511352367
JROC01000029
Bacillota
Limosilactobacillus mucosae CRL573 [JROC]
1232
1319
+
Ser
TGA
[ENA]
¡û
>W1511388687
JSWI01000006
Bacillota
Limosilactobacillus mucosae DPC 6426 [JSWI]
56286
56199
-
Ser
TGA
[ENA]
¡û
>W1511443781
JUTH01000135
Bacillota
Limosilactobacillus fermentum 779_LFER [JUTH]
4169
4256
+
Ser
TGA
[ENA]
¡û
>W1511567842
LAIK01000007
Bacillota
Limosilactobacillus fermentum LfQi6 [LAIK]
156967
156880
-
Ser
TGA
[ENA]
¡û
>W1511580731
LARO01000089
Bacillota
Lactobacillus sp. N54.MGS-719 [LARO]
867
780
-
Ser
TGA
[ENA]
¡û
>W1511589467
LBDG01000003
Bacillota
Limosilactobacillus fermentum 39 [LBDG]
5969
6056
+
Ser
TGA
[ENA]
¡û
>W1511589527
LBDH01000013
Bacillota
Limosilactobacillus fermentum 90 TC-4 [LBDH]
63243
63156
-
Ser
TGA
[ENA]
¡û
>C161077732
CP014787
Bacillota
Limosilactobacillus oris J-1 [CP014787]
1254717
1254630
-
Ser
TGA
-
¡û
>W1610035651
AZEQ01000086
Bacillota
Limosilactobacillus mucosae DSM 13345 [AZEQ]
115
28
-
Ser
TGA
[ENA]
¡û
>W1610036787
AZFN01000054
Bacillota
Limosilactobacillus gastricus DSM 16045 [AZFN]
464
551
+
Ser
TGA
[ENA]
¡û
>W1610037534
AZGC01000038
Bacillota
Limosilactobacillus equigenerosi DSM 18793 = JCM 14505 [AZGC]
300
387
+
Ser
TGA
[ENA]
¡û
>W1610044685
BBAS01000032
Bacillota
Limosilactobacillus equigenerosi DSM 18793 = JCM 14505 [BBAS]
860
947
+
Ser
TGA
[ENA]
¡û
>W1610061849
BCMX01000073
Bacillota
Limosilactobacillus equigenerosi [BCMX]
885
972
+
Ser
TGA
[ENA]
¡û
>W1610083187
CBUR010000048
Bacillota
Limosilactobacillus fermentum L930BB [CBUR]
935
1022
+
Ser
TGA
[ENA]
¡û
>W121033323
AHIT01000015
Bacillota
Limosilactobacillus mucosae LM1 [AHIT]
132
219
+
Ser
TGA
[ENA]
¡û
>W121045241
AICN01000078
Bacillota
Limosilactobacillus gastricus PS3 [AICN]
79058
78971
-
Ser
TGA
[ENA]
¡û
>C131016174
CP005958
Bacillota
Limosilactobacillus fermentum F-6 [CP005958]
633508
633595
+
Ser
TGA
[Ensembl]
¡û
>W1610527937
JQAU01000042
Bacillota
Limosilactobacillus fermentum [JQAU]
762
849
+
Ser
TGA
[ENA]
¡û
>W1610647376
LJFJ01000004
Bacillota
Limosilactobacillus fermentum [LJFJ]
844407
844320
-
Ser
TGA
[ENA]
¡û
>W1610665520
LJWZ01000013
Bacillota
Limosilactobacillus fermentum [LJWZ]
943
1030
+
Ser
TGA
[ENA]
¡û
>W1710032690
AZEQ01000086
Bacillota
Limosilactobacillus mucosae DSM 13345 [AZEQ]
115
28
-
Ser
TGA
[ENA]
¡û
>W1710033826
AZFN01000054
Bacillota
Limosilactobacillus gastricus DSM 16045 [AZFN]
464
551
+
Ser
TGA
[ENA]
¡û
>W1710034573
AZGC01000038
Bacillota
Limosilactobacillus equigenerosi DSM 18793 = JCM 14505 [AZGC]
300
387
+
Ser
TGA
[ENA]
¡û
>W1710041783
BBAS01000032
Bacillota
Limosilactobacillus equigenerosi DSM 18793 = JCM 14505 [BBAS]
860
947
+
Ser
TGA
[ENA]
¡û
>W1710059514
BCMX01000073
Bacillota
Limosilactobacillus equigenerosi [BCMX]
885
972
+
Ser
TGA
[ENA]
¡û
>W1710088307
CBUR010000048
Bacillota
Limosilactobacillus fermentum L930BB [CBUR]
935
1022
+
Ser
TGA
[ENA]
¡û
>W1710523872
FNIH01000007
Bacillota
Limosilactobacillus mucosae [FNIH]
373
460
+
Ser
TGA
[ENA]
¡û
>W1710566934
FOSI01000007
Bacillota
Limosilactobacillus mucosae [FOSI]
297
384
+
Ser
TGA
[ENA]
¡û
>W1710629568
JQAU01000042
Bacillota
Limosilactobacillus fermentum [JQAU]
762
849
+
Ser
TGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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